Variant report

Variant	rs663543
Chromosome Location	chr11:86361106-86361107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86360141..86362731-chr11:86373368..86375959,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11234719	0.90[ASN][1000 genomes]
rs11234731	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11530882	0.81[AMR][1000 genomes]
rs11560984	0.82[AMR][1000 genomes]
rs12274942	0.89[ASN][1000 genomes]
rs12282010	0.90[ASN][1000 genomes]
rs12288119	0.90[ASN][1000 genomes]
rs17757676	0.90[ASN][1000 genomes]
rs1938921	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938929	0.90[ASN][1000 genomes]
rs1938931	0.90[ASN][1000 genomes]
rs1938932	0.90[ASN][1000 genomes]
rs1938935	0.92[ASN][1000 genomes]
rs2017483	0.90[ASN][1000 genomes]
rs2155033	0.82[AMR][1000 genomes]
rs2212340	0.90[ASN][1000 genomes]
rs2212341	0.88[ASN][1000 genomes]
rs4144866	0.90[ASN][1000 genomes]
rs4245417	0.90[ASN][1000 genomes]
rs4245418	0.90[ASN][1000 genomes]
rs4245419	0.90[ASN][1000 genomes]
rs4245420	0.90[ASN][1000 genomes]
rs4245421	0.90[ASN][1000 genomes]
rs4245422	0.90[ASN][1000 genomes]
rs4245423	0.90[ASN][1000 genomes]
rs4245424	0.90[ASN][1000 genomes]
rs4439535	0.90[ASN][1000 genomes]
rs4943948	0.86[ASN][1000 genomes]
rs4943949	0.90[ASN][1000 genomes]
rs4944602	0.90[ASN][1000 genomes]
rs4944603	0.90[ASN][1000 genomes]
rs4944607	0.90[ASN][1000 genomes]
rs4944609	0.90[ASN][1000 genomes]
rs4944611	0.90[ASN][1000 genomes]
rs4944612	0.90[ASN][1000 genomes]
rs4944618	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4944620	0.82[AMR][1000 genomes]
rs4944622	0.81[AMR][1000 genomes]
rs496167	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550168	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs647782	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs656307	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592301	0.90[ASN][1000 genomes]
rs6592302	0.90[ASN][1000 genomes]
rs670736	0.86[AMR][1000 genomes]
rs7105863	0.90[ASN][1000 genomes]
rs7106865	0.87[ASN][1000 genomes]
rs7115580	0.90[ASN][1000 genomes]
rs7115594	0.90[ASN][1000 genomes]
rs7115834	0.90[ASN][1000 genomes]
rs7120444	0.90[ASN][1000 genomes]
rs7123044	0.89[ASN][1000 genomes]
rs7935437	0.81[AMR][1000 genomes]
rs7937853	0.90[ASN][1000 genomes]
rs7938344	0.82[AMR][1000 genomes]
rs7941337	0.90[ASN][1000 genomes]
rs7941446	0.90[ASN][1000 genomes]
rs7948981	0.89[ASN][1000 genomes]
rs7951868	0.90[ASN][1000 genomes]
rs9787905	0.90[ASN][1000 genomes]
rs9943508	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9943610	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs999472	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555704	chr11:86344677-86386784	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86344000-86373800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:86348800-86361600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:86355600-86370400	Weak transcription	Psoas Muscle	Psoas
4	chr11:86356200-86361800	Weak transcription	Left Ventricle	heart
5	chr11:86356600-86361800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:86356800-86369600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:86357000-86361800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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