Variant report

Variant	rs663964
Chromosome Location	chr21:29932625-29932626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10896227	0.88[ASN][1000 genomes]
rs10896325	0.93[ASN][1000 genomes]
rs10896345	0.93[ASN][1000 genomes]
rs11227964	0.88[ASN][1000 genomes]
rs12277883	0.93[ASN][1000 genomes]
rs12285921	0.91[ASN][1000 genomes]
rs12786642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1573512	0.93[ASN][1000 genomes]
rs1945228	0.93[ASN][1000 genomes]
rs2220001	0.88[ASN][1000 genomes]
rs34434887	0.93[ASN][1000 genomes]
rs4420287	0.93[ASN][1000 genomes]
rs4938829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4939033	0.82[ASN][1000 genomes]
rs4939037	0.93[ASN][1000 genomes]
rs4939054	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs594113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597016	0.92[ASN][1000 genomes]
rs597031	0.89[ASN][1000 genomes]
rs597045	0.92[ASN][1000 genomes]
rs597102	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs610822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs612885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs615231	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs621826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs624412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs634955	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs637202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs638801	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs639419	0.92[ASN][1000 genomes]
rs640953	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs647027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs647058	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs647402	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs652537	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6591233	0.91[ASN][1000 genomes]
rs6591310	0.93[ASN][1000 genomes]
rs660788	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs669453	0.96[ASN][1000 genomes]
rs672711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs675120	0.97[ASN][1000 genomes]
rs675991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs680490	1.00[ASN][1000 genomes]
rs683539	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7105808	0.93[ASN][1000 genomes]
rs7116573	0.93[ASN][1000 genomes]
rs7126732	0.93[ASN][1000 genomes]
rs7131637	0.92[ASN][1000 genomes]
rs7940239	0.91[ASN][1000 genomes]
rs871301	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913672	chr21:29899760-29999970	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:29916600-29946000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr21:29917600-29934600	Weak transcription	Left Ventricle	heart
3	chr21:29927800-29934000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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