Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:56912031..56914480-chr11:56915685..56918667,3	K562	blood:
2	chr11:56916772..56919758-chr11:56922805..56925674,2	K562	blood:
3	chr11:56917823..56920526-chr11:57190278..57193048,2	K562	blood:

Variant related genes	Relation type
ENSG00000254979	Chromatin interaction

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11820215	0.82[CHB][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs2077190	0.82[CHB][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs4442567	0.81[ASN][1000 genomes]
rs480586	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486524	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs489379	0.89[ASN][1000 genomes]
rs514354	0.83[ASN][1000 genomes]
rs542107	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567766	0.95[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs609763	0.95[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs622932	0.95[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs646146	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs648409	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs652068	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes]
rs948851	0.82[CHB][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56915600-56919200	Enhancers	K562	blood
2	chr11:56916200-56919600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:56916400-56923000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56916600-56918600	Enhancers	Adipose Nuclei	Adipose
5	chr11:56916800-56920400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:56917200-56918400	Enhancers	Right Ventricle	heart
7	chr11:56917200-56918800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:56917400-56918600	Enhancers	Left Ventricle	heart
9	chr11:56917400-56918600	Enhancers	Right Atrium	heart
10	chr11:56917400-56918800	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:56917400-56919600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:56917600-56922800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:56918000-56918400	Enhancers	Colon Smooth Muscle	Colon
14	chr11:56918000-56918600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:56918000-56918600	Enhancers	Fetal Lung	lung
16	chr11:56918000-56918600	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:56918000-56918800	Enhancers	Fetal Heart	heart
18	chr11:56918200-56918600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:56918200-56918600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:56918200-56918600	Enhancers	Spleen	Spleen
21	chr11:56918200-56918800	Enhancers	Lung	lung
22	chr11:56918200-56923000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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