Variant report
| Variant | rs6647139 |
|---|---|
| Chromosome Location | chrX:74737869-74737870 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11796028 | 0.87[CHB][hapmap] |
| rs11796750 | 0.87[CHB][hapmap] |
| rs12839727 | 0.87[CHB][hapmap] |
| rs1936915 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1936917 | 0.87[CHB][hapmap] |
| rs2012661 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap] |
| rs2124691 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2124693 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2367174 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2886929 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs4892408 | 0.87[CHB][hapmap];0.82[MEX][hapmap] |
| rs4892580 | 0.87[CHB][hapmap] |
| rs5937369 | 0.87[CHB][hapmap] |
| rs5937384 | 0.87[CHB][hapmap] |
| rs5938060 | 0.87[CHB][hapmap] |
| rs5938075 | 0.87[CHB][hapmap];0.82[MEX][hapmap] |
| rs5938116 | 0.87[CHB][hapmap] |
| rs5981861 | 0.87[CHB][hapmap] |
| rs5981875 | 0.87[CHB][hapmap] |
| rs5981886 | 0.87[CHB][hapmap];0.88[MEX][hapmap] |
| rs6607563 | 0.87[CHB][hapmap] |
| rs6647730 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6647731 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
| rs6647753 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap] |
| rs7052314 | 0.87[CHB][hapmap];0.82[MEX][hapmap] |
| rs7878508 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
| rs9887743 | 0.87[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534539 | chrX:74669627-75200415 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:74722600-74741800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
