Variant report

Variant	rs6647583
Chromosome Location	chrX:74146249-74146250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:74146242-74146292	HEK293	kidney:	embryo
2	chrX:74146242-74146292	AG04449	skin:	fetal
3	chrX:74146242-74146292	CMK	blood:	n/a
4	chrX:74146242-74146292	GM12891	blood:	n/a
5	chrX:74146242-74146292	T-47D	breast:	n/a
6	chrX:74146242-74146292	PFSK-1	brain:	n/a
7	chrX:74146242-74146292	HL-60	blood:	n/a
8	chrX:74146242-74146292	Hela-S3	cervix:	n/a
9	chrX:74146242-74146292	HEEpiC	esophagus:	n/a
10	chrX:74146242-74146292	HCF	heart:	n/a
11	chrX:74146242-74146292	GM19239	blood:	n/a
12	chrX:74146242-74146292	Jurkat	blood:	n/a
13	chrX:74146242-74146292	PANC-1	pancreas:	n/a
14	chrX:74146242-74146292	AG09319	gingival:	n/a
15	chrX:74146242-74146292	HCM	heart:	n/a
16	chrX:74146242-74146292	AoSMC	blood vessel:	n/a
17	chrX:74146242-74146292	AG09309	skin:	n/a
18	chrX:74146242-74146292	ovcar-3	ovarian:	n/a
19	chrX:74146242-74146292	ProgFib	skin:	n/a
20	chrX:74146242-74146292	GM12878	blood:	n/a
21	chrX:74146242-74146292	NHBE	bronchial:	n/a
22	chrX:74146242-74146292	AG10803	skin:	n/a
23	chrX:74146242-74146292	K562	blood:	n/a
24	chrX:74146242-74146292	MCF10A-Er-Src	breast:	n/a
25	chrX:74146242-74146292	HCT-116	colon:	n/a
26	chrX:74146242-74146292	AG04450	lung:	fetal
27	chrX:74146242-74146292	HUVEC	blood vessel:	n/a
28	chrX:74146242-74146292	HCPEpiC	choroid plexus:	n/a
29	chrX:74146242-74146292	H1-hESC	embryonic stem cell:	embryo
30	chrX:74146242-74146292	SK-N-MC	brain:	n/a
31	chrX:74146242-74146292	Caco-2	colon:	n/a
32	chrX:74146242-74146292	ECC-1	luminal epithelium:	n/a
33	chrX:74146242-74146292	HRCEpiC	kidney:	n/a
34	chrX:74146242-74146292	PrEC	prostate:	n/a
35	chrX:74146242-74146292	HRE	kidney:	n/a
36	chrX:74146242-74146292	MCF-7	breast:	n/a
37	chrX:74146242-74146292	NH-A	brain:	n/a
38	chrX:74146242-74146292	SAEC	small airway:	n/a
39	chrX:74146242-74146292	SK-N-SH	brain:	n/a
40	chrX:74146242-74146292	HAEpiC	amniotic membrane:	n/a
41	chrX:74146242-74146292	Hepatocyte	liver:	n/a
42	chrX:74146242-74146292	SKMC	muscle:	n/a
43	chrX:74146242-74146292	HRPEpiC	eye:	n/a
44	chrX:74146242-74146292	NB4	blood:	n/a
45	chrX:74146242-74146292	SK-N-SH_RA	brain:	n/a
46	chrX:74146242-74146292	IMR90	lung:	fetal
47	chrX:74146242-74146292	RPTEC	kidney:	n/a
48	chrX:74146242-74146292	LNCaP	prostate:	n/a
49	chrX:74146242-74146292	GM12892	blood:	n/a
50	chrX:74146242-74146292	U87	brain:	n/a

No data

Variant related genes	Relation type
KIAA2022	CpG island

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12689586	0.84[CHB][hapmap]
rs1361828	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1573169	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16988567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs2153984	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs2226174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs4892530	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4892539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs5937900	0.87[MEX][hapmap]
rs5981700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs6607490	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6607496	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647073	0.87[MEX][hapmap]
rs6647074	0.87[MEX][hapmap]
rs6647077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6647531	1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[MEX][hapmap]
rs6647537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs6647563	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6647565	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs6647567	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647568	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647569	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647571	1.00[CEU][hapmap]
rs6647574	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs6647579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs6647582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74145600-74149400	Weak transcription	GM12878-XiMat	blood
2	chrX:74145800-74146600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links