Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1010616	0.86[CEU][hapmap]
rs11796028	0.84[CHB][hapmap]
rs11796750	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs12832571	0.84[CHB][hapmap]
rs12839727	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs1936915	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936917	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs2012661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124693	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2367174	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2886929	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4892408	0.84[CHB][hapmap]
rs4892580	0.84[CHB][hapmap]
rs5937369	0.84[CHB][hapmap]
rs5937384	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs5938060	0.84[CHB][hapmap]
rs5938075	0.84[CHB][hapmap]
rs5938116	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs5981861	0.84[CHB][hapmap]
rs5981875	0.84[CHB][hapmap]
rs5981886	0.84[CHB][hapmap]
rs6607563	0.84[CHB][hapmap]
rs6647139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647731	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7052314	0.84[CHB][hapmap]
rs7878508	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9887743	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74629200-74652400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chrX:74637200-74651000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:74647400-74651600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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