Variant report

Variant	rs6651182
Chromosome Location	chr8:99585434-99585435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99580951..99583147-chr8:99585319..99588307,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10096329	0.81[JPT][hapmap]
rs10447977	0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10755896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10755897	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955178	0.82[JPT][hapmap]
rs10955186	0.82[JPT][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10955187	0.82[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10955188	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10955189	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10955190	0.95[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap]
rs11774463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11775055	0.87[AMR][1000 genomes]
rs11778767	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs11780292	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11780369	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11780500	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs11785245	0.82[JPT][hapmap]
rs12114834	0.83[MEX][hapmap];0.93[TSI][hapmap]
rs12541317	0.93[YRI][hapmap]
rs12542069	0.83[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12542649	0.86[ASN][1000 genomes]
rs12542758	0.87[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12547297	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12549803	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12550012	0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12550783	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12675964	0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12677183	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12679268	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12680195	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12680490	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12680602	0.83[AMR][1000 genomes]
rs13257475	0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs13258214	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13269932	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13271844	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13275372	0.80[AMR][1000 genomes]
rs13275915	0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs16897076	0.91[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs34114299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34366206	0.82[CHB][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs34477118	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34855977	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35447893	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35798019	0.82[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4131873	0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.80[ASN][1000 genomes]
rs4279561	0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs4440607	0.80[EUR][1000 genomes]
rs4509292	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4517094	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4541872	0.81[ASN][1000 genomes]
rs4549741	0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs4612309	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734410	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4735568	0.84[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4735569	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735570	0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[LWK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735571	0.82[ASN][1000 genomes]
rs4735574	0.82[CHB][hapmap];0.98[CHD][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs57034072	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62532565	0.81[ASN][1000 genomes]
rs62535381	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62535382	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62535383	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62535404	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62535408	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62535410	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62535412	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6988087	0.82[JPT][hapmap];0.82[TSI][hapmap]
rs6992925	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72666669	0.84[ASN][1000 genomes]
rs7816638	0.86[ASN][1000 genomes]
rs7818010	0.83[CHB][hapmap];0.86[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7818828	0.95[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs7838239	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9656842	0.84[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv611808	chr8:99544765-99591736	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1030498	chr8:99545493-99607093	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99531400-99586400	Weak transcription	HSMM	muscle
2	chr8:99544600-99587000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:99553400-99586000	Weak transcription	Ovary	ovary
4	chr8:99553600-99589600	Weak transcription	Fetal Stomach	stomach
5	chr8:99554800-99593200	Weak transcription	K562	blood
6	chr8:99556200-99606200	Weak transcription	Psoas Muscle	Psoas
7	chr8:99559600-99586200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:99559600-99586600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:99559600-99596200	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:99559800-99588400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:99559800-99601600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:99560200-99586600	Weak transcription	Liver	Liver
13	chr8:99560400-99586200	Weak transcription	Placenta	Placenta
14	chr8:99560400-99592800	Weak transcription	Left Ventricle	heart
15	chr8:99560400-99593400	Weak transcription	Aorta	Aorta
16	chr8:99560400-99602200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:99570200-99586200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:99570400-99586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:99570800-99587000	Weak transcription	NHEK	skin
20	chr8:99572000-99586400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:99572400-99586400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:99572400-99586600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:99573000-99586800	Weak transcription	NHDF-Ad	bronchial
24	chr8:99578200-99610000	Weak transcription	HSMMtube	muscle
25	chr8:99580000-99586400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:99581800-99585800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr8:99581800-99586400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:99582000-99586400	Weak transcription	Fetal Lung	lung
29	chr8:99582000-99589800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:99582200-99589000	Weak transcription	Fetal Thymus	thymus
31	chr8:99583400-99602200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:99583800-99585600	Weak transcription	Fetal Intestine Large	intestine
33	chr8:99583800-99589200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:99584400-99586200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:99584600-99602400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:99585000-99589400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:99585200-99585800	Enhancers	Fetal Intestine Small	intestine
38	chr8:99585400-99585600	Weak transcription	Pancreas	Pancrea
39	chr8:99585400-99586600	Weak transcription	Fetal Heart	heart

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