Variant report

Variant	rs6651235
Chromosome Location	chr8:126338372-126338373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17318327	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17403341	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4006653	1.00[ASN][1000 genomes]
rs58650877	1.00[ASN][1000 genomes]
rs60652599	1.00[ASN][1000 genomes]
rs6651234	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651236	0.96[ASN][1000 genomes]
rs6651237	1.00[ASN][1000 genomes]
rs7004876	1.00[ASN][1000 genomes]
rs73336867	1.00[ASN][1000 genomes]
rs73338880	1.00[ASN][1000 genomes]
rs73338881	1.00[ASN][1000 genomes]
rs73338901	1.00[ASN][1000 genomes]
rs7824635	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv3419040	chr8:126271495-126339914	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv891436	chr8:126283766-126345076	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126318600-126354600	Weak transcription	Ovary	ovary
2	chr8:126322000-126374200	Weak transcription	Aorta	Aorta
3	chr8:126323600-126340200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:126324200-126354200	Weak transcription	Hela-S3	cervix
5	chr8:126329400-126344000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:126330800-126369200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr8:126331200-126357400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:126331800-126340600	Weak transcription	K562	blood
9	chr8:126331800-126341400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:126332400-126345600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:126332600-126369400	Weak transcription	Fetal Stomach	stomach
12	chr8:126333000-126354200	Weak transcription	Fetal Lung	lung
13	chr8:126333400-126340000	Weak transcription	A549	lung
14	chr8:126334800-126340200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:126335600-126340000	Weak transcription	NHDF-Ad	bronchial
16	chr8:126335600-126346000	Weak transcription	Fetal Intestine Small	intestine
17	chr8:126335600-126353200	Weak transcription	Primary B cells from cord blood	blood
18	chr8:126336600-126354200	Weak transcription	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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