Variant report

Variant	rs6651365
Chromosome Location	chr8:42570018-42570019
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6980873	1.00[AMR][1000 genomes]
rs7000889	1.00[AMR][1000 genomes]
rs7824073	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1030451	chr8:42543326-42618390	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1034121	chr8:42549810-42618713	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42566200-42574200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:42568000-42571200	Enhancers	Primary T cells from cord blood	blood
3	chr8:42568600-42570600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:42568600-42574600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:42568800-42574800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:42569000-42574400	Weak transcription	Fetal Thymus	thymus
7	chr8:42569200-42570200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr8:42569200-42570600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:42569400-42574200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:42569800-42570200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:42570000-42570200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:42570000-42570600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:42570000-42571000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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