Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24326579..24328527-chr18:24362344..24365201,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11659207	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11659904	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11659906	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11661270	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11663064	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12954845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12965167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12970160	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17611328	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17684326	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34047317	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34315959	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34775621	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34791772	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34909051	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35531875	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35601155	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66950491	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs66985226	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs67384004	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs67918306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71352701	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24360200-24364600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:24361000-24363800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:24361200-24364800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr18:24362000-24364800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:24362400-24365800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:24363200-24365000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr18:24363800-24364000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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