Variant report

Variant	rs6656675
Chromosome Location	chr1:215277616-215277617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10465699	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10494990	1.00[CEU][hapmap]
rs11120491	1.00[CEU][hapmap]
rs12047560	1.00[CEU][hapmap]
rs12064019	1.00[CEU][hapmap]
rs12069967	1.00[MEX][hapmap]
rs12131195	1.00[CEU][hapmap]
rs1349672	1.00[CEU][hapmap]
rs1452634	1.00[CEU][hapmap]
rs17024306	1.00[CEU][hapmap]
rs4375232	0.86[LWK][hapmap]
rs6695704	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215265400-215280800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:215276600-215277800	Weak transcription	Brain Germinal Matrix	brain
3	chr1:215276600-215278000	Enhancers	Osteobl	bone
4	chr1:215276800-215278000	Enhancers	NHDF-Ad	bronchial
5	chr1:215276800-215278200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:215277400-215278000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:215277400-215278000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:215277400-215278000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:215277600-215277800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:215277600-215277800	Enhancers	Fetal Brain Male	brain
11	chr1:215277600-215278000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:215277600-215278000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:215277600-215278000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:215277600-215278000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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