Variant report

Variant	rs6656853
Chromosome Location	chr1:71325299-71325300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1327464	0.86[ASN][1000 genomes]
rs1359835	0.86[ASN][1000 genomes]
rs1409977	0.87[ASN][1000 genomes]
rs17131468	0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs35755730	0.89[ASN][1000 genomes]
rs4998697	0.83[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs6424408	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6424409	0.89[ASN][1000 genomes]
rs6672081	1.00[JPT][hapmap]
rs7528081	0.86[ASN][1000 genomes]
rs7547606	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6656853	LRRC7	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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