Variant report

Variant	rs6658701
Chromosome Location	chr1:215639899-215639900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1813406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6658578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6699795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv945287	chr1:215627807-215645387	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215639800-215640200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:215639800-215640200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:215639800-215640200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:215639800-215640200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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