Variant report

Variant	rs6658802
Chromosome Location	chr1:172888058-172888059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172886343..172888966-chr1:172894471..172896944,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10489275	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845169	1.00[AMR][1000 genomes]
rs4615873	1.00[AMR][1000 genomes]
rs73046026	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046030	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049845	1.00[AMR][1000 genomes]
rs7416404	1.00[AMR][1000 genomes]
rs7524172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548612	1.00[AMR][1000 genomes]
rs7550854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550931	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172882800-172889400	Enhancers	HUVEC	blood vessel
2	chr1:172883000-172889600	Enhancers	NHLF	lung
3	chr1:172883400-172888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:172883400-172888400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:172883400-172889200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:172883400-172889400	Enhancers	NHDF-Ad	bronchial
7	chr1:172883600-172888200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:172883600-172888200	Enhancers	Osteobl	bone
9	chr1:172883600-172889400	Enhancers	HMEC	breast
10	chr1:172883600-172890400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:172883800-172890600	Enhancers	HSMMtube	muscle
12	chr1:172884000-172889600	Enhancers	HSMM	muscle
13	chr1:172884400-172888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:172885200-172889800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:172885400-172888200	Enhancers	NH-A	brain
16	chr1:172886400-172888200	Enhancers	Hela-S3	cervix
17	chr1:172886800-172888200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:172887400-172889600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:172887600-172889400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:172887600-172889600	Enhancers	NHEK	skin
21	chr1:172887600-172889800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:172887800-172889000	Enhancers	A549	lung
23	chr1:172887800-172889200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:172887800-172889400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:172888000-172897200	Weak transcription	Colon Smooth Muscle	Colon

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