Variant report

Variant	rs6660802
Chromosome Location	chr1:155904875-155904876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:126)
CpG islands
(count:61)
Chromatin interactive
region (count:42)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:126 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:155903265-155905063	PANC-1	pancreas:	n/a	n/a
2	BHLHE40	chr1:155903891-155904890	K562	blood:	n/a	n/a
3	POLR2A	chr1:155903742-155904913	HepG2	liver:	n/a	n/a
4	POLR2A	chr1:155903369-155905013	IMR90	lung:	n/a	n/a
5	POLR2A	chr1:155903888-155904971	GM12878	blood:	n/a	n/a
6	MYC	chr1:155903953-155904930	K562	blood:	n/a	chr1:155904472-155904481
7	NR3C1	chr1:155904790-155905019	ECC-1	luminal epithelium:	n/a	chr1:155904884-155904898 chr1:155904884-155904898 chr1:155904888-155904901 chr1:155904878-155904904
8	POLR2A	chr1:155903707-155905061	Hela-S3	cervix:	n/a	n/a
9	PML	chr1:155903644-155905079	K562	blood:	n/a	n/a
10	POLR2A	chr1:155902994-155905141	GM12892	blood:	n/a	n/a
11	POLR2A	chr1:155903760-155905049	K562	blood:	n/a	n/a
12	WRNIP1	chr1:155903387-155904896	GM12878	blood:	n/a	n/a
13	STAT5A	chr1:155903556-155905033	GM12878	blood:	n/a	n/a
14	THAP1	chr1:155904757-155904947	K562	blood:	n/a	n/a
15	MTA3	chr1:155903348-155905012	GM12878	blood:	n/a	n/a
16	POLR2A	chr1:155904687-155904980	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr1:155903774-155904899	K562	blood:	n/a	n/a
18	POLR2A	chr1:155904662-155904991	HepG2	liver:	n/a	n/a
19	KAP1	chr1:155904027-155904972	U2OS	brain:	n/a	n/a
20	YY1	chr1:155903796-155904968	H1-hESC	embryonic stem cell:	n/a	chr1:155904368-155904390 chr1:155904425-155904447 chr1:155904379-155904387
21	TCF7L2	chr1:155904170-155904993	PANC-1	pancreas:	n/a	chr1:155904946-155904955 chr1:155904944-155904958
22	GABPA	chr1:155903660-155904916	SK-N-SH	brain:	n/a	n/a
23	HEY1	chr1:155903295-155905039	K562	blood:	n/a	n/a
24	SP1	chr1:155903769-155904977	A549	lung:	n/a	chr1:155904283-155904304 chr1:155904218-155904229
25	ZNF263	chr1:155903538-155904956	HEK293-T-REx	kidney:	n/a	chr1:155903941-155903950
26	TAF1	chr1:155903787-155904972	K562	blood:	n/a	n/a
27	FOXA2	chr1:155904747-155905031	HepG2	liver:	n/a	n/a
28	GABPA	chr1:155903464-155905068	A549	lung:	n/a	n/a
29	ZNF384	chr1:155904802-155905244	K562	blood:	n/a	n/a
30	YY1	chr1:155903716-155905180	GM12878	blood:	n/a	chr1:155904368-155904390 chr1:155904425-155904447 chr1:155904379-155904387
31	TCF12	chr1:155903789-155905003	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr1:155903657-155905113	U87	brain:	n/a	n/a
33	POLR2A	chr1:155902856-155905382	HepG2	liver:	n/a	n/a
34	TEAD4	chr1:155903875-155904940	K562	blood:	n/a	n/a
35	CBX3	chr1:155903810-155905296	K562	blood:	n/a	n/a
36	POLR2A	chr1:155903691-155905445	U87	brain:	n/a	n/a
37	YY1	chr1:155903838-155905032	GM12878	blood:	n/a	chr1:155904368-155904390 chr1:155904425-155904447 chr1:155904379-155904387
38	TBP	chr1:155903802-155904958	HepG2	liver:	n/a	n/a
39	POLR2A	chr1:155903749-155904955	U87	brain:	n/a	n/a
40	YY1	chr1:155903617-155905099	SK-N-SH	brain:	n/a	chr1:155904368-155904390 chr1:155904425-155904447 chr1:155904379-155904387
41	POLR2A	chr1:155903543-155904940	GM12891	blood:	n/a	n/a
42	MYBL2	chr1:155903884-155905151	HepG2	liver:	n/a	chr1:155904912-155904922
43	POLR2A	chr1:155903914-155905021	HepG2	liver:	n/a	n/a
44	YY1	chr1:155903729-155904876	SK-N-SH_RA	brain:	n/a	chr1:155904368-155904390 chr1:155904425-155904447 chr1:155904379-155904387
45	ZNF217	chr1:155904243-155905020	MCF-7	breast:	n/a	n/a
46	POLR2A	chr1:155903870-155905002	HepG2	liver:	n/a	n/a
47	POLR2A	chr1:155903850-155905035	HepG2	liver:	n/a	n/a
48	ZMIZ1	chr1:155903785-155904947	K562	blood:	n/a	n/a
49	ELK1	chr1:155903910-155904926	GM12878	blood:	n/a	n/a
50	YY1	chr1:155904712-155905005	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:155904847-155904897	BE2_C	brain:	n/a
2	chr1:155904847-155904897	IMR90	lung:	fetal
3	chr1:155904847-155904897	AG10803	skin:	n/a
4	chr1:155904847-155904897	HIPEpiC	eye:	n/a
5	chr1:155904847-155904897	GM06990	blood:	n/a
6	chr1:155904847-155904897	GM12892	blood:	n/a
7	chr1:155904847-155904897	HEEpiC	esophagus:	n/a
8	chr1:155904847-155904897	HCM	heart:	n/a
9	chr1:155904847-155904897	NT2-D1	testis:	n/a
10	chr1:155904847-155904897	HNPCEpiC	eye:	n/a
11	chr1:155904847-155904897	HPAEpiC	pulmonary alveolar:	n/a
12	chr1:155904847-155904897	AG04450	lung:	fetal
13	chr1:155904847-155904897	SAEC	small airway:	n/a
14	chr1:155904847-155904897	RPTEC	kidney:	n/a
15	chr1:155904847-155904897	T-47D	breast:	n/a
16	chr1:155904847-155904897	AG09309	skin:	n/a
17	chr1:155904847-155904897	GM12878	blood:	n/a
18	chr1:155904847-155904897	Jurkat	blood:	n/a
19	chr1:155904847-155904897	HCPEpiC	choroid plexus:	n/a
20	chr1:155904847-155904897	ProgFib	skin:	n/a
21	chr1:155904847-155904897	HepG2	liver:	n/a
22	chr1:155904847-155904897	Caco-2	colon:	n/a
23	chr1:155904847-155904897	PANC-1	pancreas:	n/a
24	chr1:155904847-155904897	SK-N-SH_RA	brain:	n/a
25	chr1:155904847-155904897	MCF-7	breast:	n/a
26	chr1:155904847-155904897	K562	blood:	n/a
27	chr1:155904847-155904897	NH-A	brain:	n/a
28	chr1:155904847-155904897	BJ	skin:	n/a
29	chr1:155904847-155904897	NHDF-neo	bronchial:	n/a
30	chr1:155904847-155904897	HCT-116	colon:	n/a
31	chr1:155904847-155904897	LNCaP	prostate:	n/a
32	chr1:155904847-155904897	GM12891	blood:	n/a
33	chr1:155904847-155904897	SK-N-MC	brain:	n/a
34	chr1:155904847-155904897	A549	lung:	n/a
35	chr1:155904847-155904897	HL-60	blood:	n/a
36	chr1:155904847-155904897	Hepatocyte	liver:	n/a
37	chr1:155904847-155904897	HMEC	breast:	n/a
38	chr1:155904847-155904897	MCF10A-Er-Src	breast:	n/a
39	chr1:155904847-155904897	PrEC	prostate:	n/a
40	chr1:155904847-155904897	GM19239	blood:	n/a
41	chr1:155904847-155904897	HRE	kidney:	n/a
42	chr1:155904847-155904897	HCF	heart:	n/a
43	chr1:155904847-155904897	H1-hESC	embryonic stem cell:	embryo
44	chr1:155904847-155904897	Hela-S3	cervix:	n/a
45	chr1:155904847-155904897	SKMC	muscle:	n/a
46	chr1:155904847-155904897	CMK	blood:	n/a
47	chr1:155904847-155904897	NHBE	bronchial:	n/a
48	chr1:155904847-155904897	SK-N-SH	brain:	n/a
49	chr1:155904847-155904897	HAEpiC	amniotic membrane:	n/a
50	chr1:155904847-155904897	ovcar-3	ovarian:	n/a

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155893064..155900339-chr1:155902644..155906758,10	MCF-7	breast:
2	chr1:155884685..155887333-chr1:155903163..155905459,3	MCF-7	breast:
3	chr1:155902449..155905054-chr1:155910368..155915421,5	MCF-7	breast:
4	chr1:155902752..155906488-chr1:155946119..155948945,5	MCF-7	breast:
5	chr1:155902819..155904971-chr1:156082922..156085849,2	K562	blood:
6	chr1:155903455..155906976-chr1:155930050..155931967,4	K562	blood:
7	chr1:155824896..155829386-chr1:155902844..155905236,4	MCF-7	breast:
8	chr1:155902986..155905727-chr1:155989614..155992044,2	MCF-7	breast:
9	chr1:155903455..155906976-chr1:155930050..155931967,3	K562	blood:
10	chr1:155902774..155905937-chr1:155970220..155974829,6	K562	blood:
11	chr1:155902649..155906864-chr1:155928278..155934368,7	MCF-7	breast:
12	chr1:155879114..155881367-chr1:155902425..155905245,4	MCF-7	breast:
13	chr1:155902799..155907084-chr1:156021354..156025347,11	K562	blood:
14	chr1:155904008..155904889-chr5:74806958..74807496,2	Hela-S3	cervix:
15	chr1:155902926..155905486-chr1:155988342..155992219,3	K562	blood:
16	chr1:155903471..155906325-chr1:156082572..156085838,3	MCF-7	breast:
17	chr1:155902871..155906324-chr1:155958036..155960843,4	K562	blood:
18	chr1:155903823..155905354-chr1:156164296..156167039,2	MCF-7	breast:
19	chr1:155902972..155905635-chr1:155940527..155942498,2	K562	blood:
20	chr1:155903740..155906324-chr1:155958823..155960843,2	K562	blood:
21	chr1:155902827..155906202-chr1:155937016..155941458,5	MCF-7	breast:
22	chr1:155902875..155906059-chr1:156051194..156053786,3	MCF-7	breast:
23	chr1:155878384..155883302-chr1:155900472..155905868,7	K562	blood:
24	chr1:155902066..155906841-chr1:156030418..156033688,4	MCF-7	breast:
25	chr1:155902617..155905990-chr1:156022859..156025987,6	MCF-7	breast:
26	chr1:155900582..155906000-chr1:156022334..156026632,8	MCF-7	breast:
27	chr1:155902817..155905494-chr1:155972290..155974046,2	MCF-7	breast:
28	chr1:155902613..155905963-chr1:155944776..155950602,8	MCF-7	breast:
29	chr1:155904008..155904976-chr17:33569273..33570189,2	Hela-S3	cervix:
30	chr1:155902334..155905932-chr1:156022257..156026290,7	K562	blood:
31	chr1:155904094..155905897-chr1:156050775..156053985,3	K562	blood:
32	chr1:155879409..155881796-chr1:155901375..155905401,4	MCF-7	breast:
33	chr1:155904591..155905243-chr1:156036120..156036817,2	MCF-7	breast:
34	chr1:155885238..155887590-chr1:155902969..155906233,3	K562	blood:
35	chr1:155902781..155905486-chr1:155988342..155993651,4	K562	blood:
36	chr1:155902096..155906333-chr1:155944635..155950706,8	K562	blood:
37	chr1:155903347..155907384-chr1:155909974..155912355,7	K562	blood:
38	chr1:155904020..155904915-chr16:31470297..31470850,2	Hela-S3	cervix:
39	chr1:155242314..155244372-chr1:155904358..155905986,2	K562	blood:
40	chr1:155902685..155905586-chr1:155957752..155961229,4	MCF-7	breast:
41	chr1:155904710..155906723-chr1:155922247..155924795,2	K562	blood:
42	chr1:155902760..155905677-chr1:155945999..155951456,7	K562	blood:

No data

Variant related genes	Relation type
KIAA0907	TF binding region
KIAA0907	CpG island
ENSG00000166750	Chromatin interaction
ENSG00000176444	Chromatin interaction
ENSG00000116586	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000116584	Chromatin interaction
ENSG00000116580	Chromatin interaction
ENSG00000160789	Chromatin interaction
ENSG00000163479	Chromatin interaction
ENSG00000173080	Chromatin interaction
ENSG00000254726	Chromatin interaction
ENSG00000113163	Chromatin interaction
ENSG00000224276	Chromatin interaction
ENSG00000273002	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000160785	Chromatin interaction
ENSG00000252808	Chromatin interaction
ENSG00000266947	Chromatin interaction
ENSG00000143622	Chromatin interaction
ENSG00000132718	Chromatin interaction
ENSG00000132698	Chromatin interaction
ENSG00000160803	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1010033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018730	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055184	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10908485	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1094558	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11264421	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12039053	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12129384	0.92[AFR][1000 genomes]
rs12138833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12747344	1.00[CEU][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]
rs1544119	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap]
rs1749407	0.91[EUR][1000 genomes]
rs1749408	0.85[EUR][1000 genomes]
rs1749409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1765275	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1964951	0.94[EUR][1000 genomes]
rs2275071	0.95[ASN][1000 genomes]
rs2275079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275081	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364402	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364404	0.89[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28379575	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2886069	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34802187	0.97[EUR][1000 genomes]
rs35138477	0.84[EUR][1000 genomes]
rs35374730	0.97[EUR][1000 genomes]
rs35588936	0.89[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs35730001	0.94[EUR][1000 genomes]
rs3738587	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3768280	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412586	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4661160	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4661162	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4661170	0.97[EUR][1000 genomes]
rs4661172	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.99[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs493446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs506688	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527113	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs536870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs572609	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605025	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6667096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71628697	0.99[EUR][1000 genomes]
rs71628699	0.85[EUR][1000 genomes]
rs822502	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs822503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs822519	0.89[ASW][hapmap];1.00[CEU][hapmap]
rs822653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155902000-155905000	Active TSS	Right Ventricle	heart
2	chr1:155902600-155905000	Active TSS	Duodenum Mucosa	Duodenum
3	chr1:155903000-155905000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:155903000-155905000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:155903000-155905000	Active TSS	A549	lung
6	chr1:155903000-155905200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:155903200-155905000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr1:155903200-155905000	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr1:155903200-155905000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:155903200-155905000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:155903200-155905000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:155903200-155905000	Active TSS	Right Atrium	heart
13	chr1:155903400-155905000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:155903400-155905000	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr1:155903400-155905000	Active TSS	Small Intestine	intestine
16	chr1:155903400-155905200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr1:155903600-155905000	Active TSS	H1 Cell Line	embryonic stem cell
18	chr1:155903600-155905000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:155903600-155905000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:155903600-155905000	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr1:155903600-155905000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:155903600-155905000	Active TSS	Brain Hippocampus Middle	brain
23	chr1:155903600-155905000	Active TSS	Brain Substantia Nigra	brain
24	chr1:155903600-155905000	Active TSS	Esophagus	oesophagus
25	chr1:155903600-155905000	Active TSS	Fetal Lung	lung
26	chr1:155903600-155905000	Active TSS	Psoas Muscle	Psoas
27	chr1:155903800-155905000	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr1:155903800-155905000	Active TSS	Fetal Brain Female	brain
29	chr1:155904200-155905000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:155904400-155905000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr1:155904400-155905000	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr1:155904400-155905000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr1:155904400-155905000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr1:155904400-155905000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr1:155904400-155905000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr1:155904400-155905000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr1:155904400-155905000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:155904400-155905000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:155904400-155905000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:155904400-155905000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:155904400-155905000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:155904400-155905000	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr1:155904400-155905000	Flanking Active TSS	Fetal Thymus	thymus
44	chr1:155904400-155905000	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr1:155904400-155905000	Flanking Active TSS	HUVEC	blood vessel
46	chr1:155904400-155905000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr1:155904400-155905000	Flanking Active TSS	NH-A	brain
48	chr1:155904600-155905000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:155904600-155905000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:155904600-155905000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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