Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211858955..211861332-chr1:212782172..212783892,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRAF5-6	chr1:211859812-211860141	XLOC_000550
2	lnc-TRAF5-6	chr1:211859812-211860132	XLOC_000550

Variant related genes	Relation type
ENSG00000162772	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11119794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578614	1.00[CHB][hapmap]
rs12074002	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12561861	1.00[CHB][hapmap]
rs1373292	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17017716	1.00[CHB][hapmap]
rs1822569	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2184844	1.00[CHB][hapmap]
rs2794731	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41275368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4511185	0.82[EUR][1000 genomes]
rs57370308	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60293324	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540691	1.00[JPT][hapmap]
rs6659316	1.00[CHB][hapmap]
rs676520	1.00[JPT][hapmap]
rs701917	0.94[ASN][1000 genomes]
rs701926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7511687	1.00[CHB][hapmap]
rs7516189	1.00[CHB][hapmap]
rs7526891	1.00[CHB][hapmap]
rs7527002	1.00[CHB][hapmap]
rs7539988	1.00[CHB][hapmap]
rs7554588	1.00[CHB][hapmap]
rs894856	1.00[JPT][hapmap]
rs9430073	1.00[JPT][hapmap]
rs9430075	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211855200-211860800	Weak transcription	GM12878-XiMat	blood
2	chr1:211855400-211860800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:211855400-211861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:211856400-211860600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:211859600-211860800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:211859600-211868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211859600-211872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:211859800-211860000	Enhancers	HepG2	liver

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