Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11572602	1.00[AMR][1000 genomes]
rs11572717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11572752	1.00[AMR][1000 genomes]
rs11572754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11572755	1.00[AMR][1000 genomes]
rs11572785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11572788	1.00[AMR][1000 genomes]
rs13375077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1339351	1.00[JPT][hapmap]
rs1339357	1.00[JPT][hapmap]
rs1361333	1.00[JPT][hapmap]
rs1361334	1.00[JPT][hapmap]
rs1416616	1.00[JPT][hapmap]
rs1416617	1.00[JPT][hapmap]
rs17043116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1846227	0.90[ASN][1000 genomes]
rs2789729	1.00[JPT][hapmap]
rs2813696	1.00[JPT][hapmap]
rs2813697	1.00[JPT][hapmap]
rs2813701	1.00[JPT][hapmap]
rs2813708	1.00[JPT][hapmap]
rs2813709	1.00[JPT][hapmap]
rs58880230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6674515	1.00[AMR][1000 genomes]
rs6676237	1.00[AMR][1000 genomes]
rs6693114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6699811	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6700565	1.00[JPT][hapmap]
rs73089920	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873178	chr1:216714314-216813244	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216775200-216835400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
3	chr1:216789800-216799800	Weak transcription	Left Ventricle	heart
4	chr1:216791000-216799800	Weak transcription	Psoas Muscle	Psoas
5	chr1:216791600-216799400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:216792400-216795800	Weak transcription	Fetal Heart	heart
7	chr1:216792400-216799200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:216792400-216809000	Weak transcription	Gastric	stomach

Quick Search: