Variant report

Variant	rs6662381
Chromosome Location	chr1:92870224-92870225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:92870200-92870576	ECC-1	luminal epithelium:	n/a	chr1:92870424-92870435
2	TEAD4	chr1:92870196-92870548	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92868279..92870742-chr1:92876215..92879386,3	K562	blood:

Variant related genes	Relation type
RN7SL824P	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10399671	0.84[AFR][1000 genomes]
rs11164423	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11166542	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12070923	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078746	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12090761	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098095	0.93[AFR][1000 genomes]
rs17131621	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17131632	0.85[AFR][1000 genomes]
rs1819256	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4617457	1.00[EUR][1000 genomes]
rs55993081	0.93[AFR][1000 genomes]
rs56112620	0.91[EUR][1000 genomes]
rs56665661	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57992264	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6603970	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662565	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6679419	0.91[EUR][1000 genomes]
rs6681027	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6683456	0.84[AFR][1000 genomes]
rs6694248	0.91[EUR][1000 genomes]
rs72958703	0.91[EUR][1000 genomes]
rs72960831	0.83[AMR][1000 genomes]
rs72960835	0.83[AMR][1000 genomes]
rs72960860	0.83[AMR][1000 genomes]
rs72960870	0.83[AMR][1000 genomes]
rs72960872	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7513631	0.83[AMR][1000 genomes]
rs7522789	0.91[EUR][1000 genomes]
rs7535181	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7546528	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92863200-92874400	Weak transcription	Thymus	Thymus

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