Variant report

Variant	rs6662428
Chromosome Location	chr1:215167236-215167237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10429947	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10779632	0.81[CHB][hapmap]
rs10864142	0.87[EUR][1000 genomes]
rs11120459	0.97[EUR][1000 genomes]
rs11802559	0.98[EUR][1000 genomes]
rs12079267	0.99[EUR][1000 genomes]
rs12084891	0.87[EUR][1000 genomes]
rs12116663	0.97[EUR][1000 genomes]
rs12131195	0.82[ASN][1000 genomes]
rs1452633	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1452634	0.81[CHB][hapmap]
rs1452635	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2601649	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2841617	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs570147	0.90[ASN][1000 genomes]
rs6679757	0.87[EUR][1000 genomes]
rs7538655	0.86[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs896653	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215163800-215168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:215164200-215167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:215164200-215174800	Weak transcription	NH-A	brain
4	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:215166600-215167600	Enhancers	NHDF-Ad	bronchial
6	chr1:215166600-215168000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:215166800-215167400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:215166800-215167400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:215166800-215167600	Enhancers	NHLF	lung
10	chr1:215166800-215168000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:215167200-215170600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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