Variant report

Variant	rs666471
Chromosome Location	chr2:21000030-21000031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20997990..21000912-chr2:21002186..21004285,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12468102	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12469525	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12476001	0.92[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16982026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16988072	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs17390286	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340602	1.00[CEU][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340603	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340607	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs4971529	0.92[EUR][1000 genomes]
rs514459	0.87[LWK][hapmap];0.93[YRI][hapmap]
rs518968	1.00[CEU][hapmap];0.88[LWK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs519025	1.00[CEU][hapmap];0.85[LWK][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs535022	0.81[LWK][hapmap];0.89[YRI][hapmap]
rs575246	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs597781	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645100	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645150	0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs839915	1.00[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20954200-21001200	Weak transcription	NH-A	brain
2	chr2:20965800-21003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:20968400-21003000	Weak transcription	Pancreas	Pancrea
4	chr2:20969000-21003000	Weak transcription	Gastric	stomach
5	chr2:20973200-21003000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
7	chr2:20974800-21000200	Weak transcription	HSMM	muscle
8	chr2:20989200-21006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:20989600-21003200	Weak transcription	Left Ventricle	heart
10	chr2:20989600-21009000	Weak transcription	Fetal Lung	lung
11	chr2:20989600-21010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:20989800-21000400	Weak transcription	Fetal Stomach	stomach
13	chr2:20989800-21003200	Weak transcription	Aorta	Aorta
14	chr2:20989800-21003800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr2:20990000-21002400	Weak transcription	Fetal Thymus	thymus
16	chr2:20990200-21002800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:20990200-21003000	Weak transcription	Lung	lung
18	chr2:20990200-21006200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:20990400-21001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:20994000-21002600	Weak transcription	Fetal Intestine Large	intestine
21	chr2:20994200-21003000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:20994600-21000800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr2:20994800-21021600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr2:20994800-21021600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:20994800-21021800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr2:20995000-21002600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:20995000-21002800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr2:20995000-21017600	Weak transcription	A549	lung
29	chr2:20995200-21003000	Weak transcription	Ovary	ovary
30	chr2:20995200-21021600	Weak transcription	K562	blood
31	chr2:20996400-21003200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:20996600-21002600	Weak transcription	Fetal Intestine Small	intestine
33	chr2:20996600-21013200	Weak transcription	HSMMtube	muscle
34	chr2:20996800-21003000	Weak transcription	HMEC	breast
35	chr2:20996800-21006000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:20997200-21002800	Weak transcription	Adipose Nuclei	Adipose
37	chr2:20997400-21000200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:20997400-21000200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:20997400-21001600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr2:20997400-21003000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:20997400-21005800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:20997400-21018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:20997400-21021600	Weak transcription	Primary B cells from cord blood	blood
44	chr2:20997600-21002600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr2:20997800-21001200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr2:20998000-21000200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:20998200-21002800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr2:20998200-21002800	Weak transcription	GM12878-XiMat	blood
49	chr2:20998200-21003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:20998200-21005800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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