Variant report

Variant	rs6665177
Chromosome Location	chr1:215231468-215231469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215228959..215231778-chr1:215232389..215235318,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1015244	1.00[CHB][hapmap]
rs10779637	0.87[CEU][hapmap];0.81[MEX][hapmap]
rs10779638	0.81[ASN][1000 genomes]
rs11120483	0.87[CEU][hapmap]
rs12061587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12066755	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs12069528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12069967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12088480	0.87[CEU][hapmap];0.81[MEX][hapmap]
rs12092515	0.93[CEU][hapmap]
rs12121815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12133857	0.93[CEU][hapmap]
rs1339409	1.00[CHB][hapmap]
rs1538546	1.00[CHB][hapmap]
rs1840049	0.80[EUR][1000 genomes]
rs1947364	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2363553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2802656	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28753797	0.85[EUR][1000 genomes]
rs4420064	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4573492	1.00[CHB][hapmap]
rs4589083	0.81[ASN][1000 genomes]
rs55651080	0.80[ASN][1000 genomes]
rs55922125	0.85[ASN][1000 genomes]
rs56036238	0.85[ASN][1000 genomes]
rs56274886	0.85[ASN][1000 genomes]
rs61818261	0.80[ASN][1000 genomes]
rs61818265	0.85[ASN][1000 genomes]
rs61818266	0.85[ASN][1000 genomes]
rs61818267	0.85[ASN][1000 genomes]
rs61818268	0.85[ASN][1000 genomes]
rs61818271	0.85[ASN][1000 genomes]
rs61818272	0.85[ASN][1000 genomes]
rs61818276	0.85[ASN][1000 genomes]
rs61818277	0.85[ASN][1000 genomes]
rs61818278	0.85[ASN][1000 genomes]
rs61818279	0.85[ASN][1000 genomes]
rs61818290	0.85[ASN][1000 genomes]
rs61818293	0.80[ASN][1000 genomes]
rs61818294	0.80[ASN][1000 genomes]
rs61818295	0.85[ASN][1000 genomes]
rs61818296	0.81[ASN][1000 genomes]
rs61818298	0.81[ASN][1000 genomes]
rs61818301	0.81[ASN][1000 genomes]
rs61818303	0.81[ASN][1000 genomes]
rs61819980	0.80[ASN][1000 genomes]
rs61819981	0.80[ASN][1000 genomes]
rs61819982	0.80[ASN][1000 genomes]
rs61820009	0.80[ASN][1000 genomes]
rs61820011	0.80[ASN][1000 genomes]
rs61820013	0.80[ASN][1000 genomes]
rs61820014	0.80[ASN][1000 genomes]
rs61820015	0.80[ASN][1000 genomes]
rs7528306	0.93[CEU][hapmap]
rs7530450	1.00[CHB][hapmap]
rs7535436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7551562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6665177	NENF	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215222800-215242200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:215228000-215233400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:215228000-215237200	Weak transcription	Pancreas	Pancrea
4	chr1:215228600-215231600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:215228800-215231600	Enhancers	NHDF-Ad	bronchial
6	chr1:215229000-215233800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:215229200-215237800	Weak transcription	NHEK	skin
8	chr1:215229400-215231800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:215230600-215232200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:215231200-215232000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:215231400-215231800	Enhancers	H9 Cell Line	embryonic stem cell

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