Variant report

Variant	rs6666342
Chromosome Location	chr1:211209023-211209024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11119654	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11806852	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12021704	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs12022715	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12022739	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12025525	0.94[ASN][1000 genomes]
rs12026311	0.94[ASN][1000 genomes]
rs12026374	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12027535	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12028941	0.81[CHB][hapmap]
rs12030715	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12036999	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12039302	0.83[ASN][1000 genomes]
rs12043937	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12043952	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046391	0.85[ASN][1000 genomes]
rs12070402	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12403500	0.85[EUR][1000 genomes]
rs12406562	0.85[ASN][1000 genomes]
rs12407609	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1501544	0.85[ASN][1000 genomes]
rs1501545	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1501548	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1501549	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1501550	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1501555	0.82[JPT][hapmap]
rs1532682	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4570464	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4575146	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56999636	0.85[ASN][1000 genomes]
rs57045219	0.87[ASN][1000 genomes]
rs57179129	0.94[ASN][1000 genomes]
rs58255417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848562	0.94[ASN][1000 genomes]
rs61848568	0.96[ASN][1000 genomes]
rs61849015	0.83[ASN][1000 genomes]
rs61849024	0.85[ASN][1000 genomes]
rs61850228	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540636	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6540638	0.83[ASN][1000 genomes]
rs6540648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659020	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6659135	0.85[ASN][1000 genomes]
rs6663672	0.84[EUR][1000 genomes]
rs6666287	0.83[ASN][1000 genomes]
rs6675213	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6678568	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6680997	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6687069	0.87[EUR][1000 genomes]
rs6688920	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6689715	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7514606	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7515316	0.80[ASN][1000 genomes]
rs7518841	0.83[ASN][1000 genomes]
rs7523929	0.82[ASN][1000 genomes]
rs7529625	0.83[EUR][1000 genomes]
rs7537597	0.86[EUR][1000 genomes]
rs7551412	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7553997	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7554723	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211194400-211209200	Weak transcription	HSMM	muscle
3	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:211207800-211209200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:211208000-211209200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:211208200-211209200	Weak transcription	NHDF-Ad	bronchial
7	chr1:211208200-211209800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:211209000-211211200	Enhancers	HSMMtube	muscle

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