Variant report
Variant | rs6667236 |
---|---|
Chromosome Location | chr1:152423840-152423841 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:9 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:152371279..152372420-chr1:152423452..152424428,9 | MCF-7 | breast: | |
2 | chr1:152162025..152163025-chr1:152423504..152424104,2 | MCF-7 | breast: | |
3 | chr1:152413209..152414030-chr1:152423642..152424387,3 | MCF-7 | breast: | |
4 | chr1:152371262..152372278-chr1:152423429..152424421,10 | MCF-7 | breast: | |
5 | chr1:152370172..152370928-chr1:152423235..152423954,2 | MCF-7 | breast: | |
6 | chr1:152319648..152320224-chr1:152423526..152424376,2 | MCF-7 | breast: | |
7 | chr1:152162027..152162959-chr1:152423046..152424098,5 | MCF-7 | breast: | |
8 | chr1:152413939..152415718-chr1:152422401..152425266,2 | K562 | blood: | |
9 | chr1:152369874..152370523-chr1:152423403..152423977,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000183586 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10157860 | 1.00[EUR][1000 genomes] |
rs11805976 | 1.00[EUR][1000 genomes] |
rs11807452 | 1.00[EUR][1000 genomes] |
rs11807465 | 1.00[EUR][1000 genomes] |
rs11810565 | 1.00[EUR][1000 genomes] |
rs12062763 | 1.00[EUR][1000 genomes] |
rs12068970 | 0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12071768 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12076464 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs16833974 | 1.00[EUR][1000 genomes] |
rs3120668 | 1.00[EUR][1000 genomes] |
rs3120669 | 1.00[EUR][1000 genomes] |
rs477291 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs506407 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs58782040 | 1.00[EUR][1000 genomes] |
rs60958057 | 1.00[EUR][1000 genomes] |
rs61250742 | 1.00[EUR][1000 genomes] |
rs61676926 | 1.00[EUR][1000 genomes] |
rs61749580 | 1.00[EUR][1000 genomes] |
rs6587670 | 1.00[EUR][1000 genomes] |
rs6669029 | 1.00[EUR][1000 genomes] |
rs6673073 | 1.00[EUR][1000 genomes] |
rs6681629 | 1.00[EUR][1000 genomes] |
rs6695830 | 1.00[EUR][1000 genomes] |
rs72997398 | 1.00[EUR][1000 genomes] |
rs72999303 | 1.00[EUR][1000 genomes] |
rs73001316 | 1.00[EUR][1000 genomes] |
rs73001318 | 1.00[EUR][1000 genomes] |
rs73001319 | 1.00[EUR][1000 genomes] |
rs73001326 | 1.00[EUR][1000 genomes] |
rs73001329 | 1.00[EUR][1000 genomes] |
rs73001338 | 1.00[EUR][1000 genomes] |
rs73007787 | 1.00[EUR][1000 genomes] |
rs73007794 | 1.00[EUR][1000 genomes] |
rs73007801 | 1.00[EUR][1000 genomes] |
rs7514641 | 1.00[EUR][1000 genomes] |
rs7549175 | 1.00[EUR][1000 genomes] |
rs7554863 | 1.00[EUR][1000 genomes] |
rs9725444 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
2 | nsv1005472 | chr1:152247763-152443448 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
3 | nsv535161 | chr1:152247763-152443448 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
4 | nsv916016 | chr1:152337775-152590520 | Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
5 | nsv872443 | chr1:152400055-152459747 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv872444 | chr1:152400361-152440753 | ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv824664 | chr1:152409024-152434443 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv463850 | chr1:152411090-152434009 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv547858 | chr1:152411090-152434009 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
10 | nsv872445 | chr1:152411813-152440753 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:152423800-152424000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr1:152423800-152424000 | Enhancers | Esophagus | oesophagus |