Variant report

Variant	rs6667275
Chromosome Location	chr1:221440840-221440841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11118661	1.00[EUR][1000 genomes]
rs11118693	1.00[EUR][1000 genomes]
rs11118695	1.00[EUR][1000 genomes]
rs11118697	1.00[EUR][1000 genomes]
rs11804822	1.00[EUR][1000 genomes]
rs11811531	1.00[EUR][1000 genomes]
rs12057905	1.00[EUR][1000 genomes]
rs12058952	1.00[EUR][1000 genomes]
rs12070831	1.00[EUR][1000 genomes]
rs12073583	1.00[EUR][1000 genomes]
rs12077976	1.00[EUR][1000 genomes]
rs12085527	1.00[EUR][1000 genomes]
rs12086603	1.00[EUR][1000 genomes]
rs12086869	1.00[EUR][1000 genomes]
rs12087664	1.00[EUR][1000 genomes]
rs60865356	1.00[EUR][1000 genomes]
rs6663534	1.00[EUR][1000 genomes]
rs73094956	1.00[EUR][1000 genomes]
rs73101522	1.00[EUR][1000 genomes]
rs74144384	1.00[EUR][1000 genomes]
rs74144425	1.00[EUR][1000 genomes]
rs7522887	1.00[EUR][1000 genomes]
rs7536615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221438000-221441400	Weak transcription	HSMMtube	muscle
2	chr1:221438200-221441000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:221438400-221441200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:221438400-221441400	Weak transcription	NHLF	lung
5	chr1:221438600-221441200	Weak transcription	NHDF-Ad	bronchial
6	chr1:221438600-221441400	Weak transcription	Osteobl	bone
7	chr1:221438800-221441200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:221438800-221441400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:221438800-221442600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:221440800-221442400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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