Variant report

Variant	rs6669457
Chromosome Location	chr1:211185813-211185814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10494931	0.81[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs10494932	0.82[CEU][hapmap]
rs10863870	0.83[ASN][1000 genomes]
rs10863874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11119658	0.81[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11119662	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11119664	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11485203	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11582507	0.81[CEU][hapmap]
rs11583101	0.82[CEU][hapmap]
rs11588573	0.95[AFR][1000 genomes]
rs12074568	0.88[AFR][1000 genomes]
rs12760791	0.81[CEU][hapmap]
rs1393026	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs1393028	0.82[CEU][hapmap]
rs1501558	0.81[CEU][hapmap]
rs1501566	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs1501569	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs1539531	0.92[CEU][hapmap]
rs17188748	0.88[CEU][hapmap]
rs1875435	0.82[JPT][hapmap]
rs2221250	0.82[CEU][hapmap]
rs2358214	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33985151	0.81[CEU][hapmap]
rs35019263	0.98[AFR][1000 genomes]
rs35711968	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4262610	0.92[AFR][1000 genomes]
rs4314946	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56260926	0.94[AFR][1000 genomes]
rs6678283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7517771	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7535286	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7536519	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211180600-211187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:211181200-211186600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211182000-211186600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:211185000-211186600	Strong transcription	HSMM	muscle
8	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:211185400-211191800	Weak transcription	HSMMtube	muscle

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