Variant report

Variant	rs6669706
Chromosome Location	chr1:211289952-211289953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211286371..211288310-chr1:211289834..211292347,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10494931	0.84[JPT][hapmap]
rs10494932	0.84[JPT][hapmap]
rs10863877	0.93[ASN][1000 genomes]
rs11119658	0.84[JPT][hapmap]
rs11119664	0.84[JPT][hapmap]
rs11119694	0.86[ASN][1000 genomes]
rs11119696	0.86[ASN][1000 genomes]
rs11579711	0.95[ASN][1000 genomes]
rs11582507	0.84[JPT][hapmap]
rs11583101	0.84[JPT][hapmap]
rs12121565	0.84[JPT][hapmap]
rs12406301	0.95[ASN][1000 genomes]
rs12408290	0.86[ASN][1000 genomes]
rs12756697	0.87[JPT][hapmap]
rs12760791	0.84[JPT][hapmap]
rs1338353	0.86[ASN][1000 genomes]
rs1393028	0.84[JPT][hapmap]
rs1501558	0.84[JPT][hapmap]
rs1501560	0.84[JPT][hapmap]
rs1538287	0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1572646	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1582137	0.86[ASN][1000 genomes]
rs17017226	0.83[ASW][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[ASN][1000 genomes]
rs17188797	0.84[JPT][hapmap]
rs17188895	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933524	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2211039	0.86[ASN][1000 genomes]
rs2221250	0.84[JPT][hapmap]
rs28826269	0.82[ASN][1000 genomes]
rs3111218	0.86[ASN][1000 genomes]
rs3111220	0.86[ASN][1000 genomes]
rs3111221	0.86[ASN][1000 genomes]
rs3111224	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3111226	0.86[ASN][1000 genomes]
rs3120775	0.86[ASN][1000 genomes]
rs3120776	0.86[ASN][1000 genomes]
rs3120777	0.86[ASN][1000 genomes]
rs3120778	0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3125850	0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3125852	0.86[ASN][1000 genomes]
rs33985151	0.84[JPT][hapmap]
rs3811396	0.95[ASN][1000 genomes]
rs3828021	0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs61848604	0.88[ASN][1000 genomes]
rs61848648	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540658	0.91[ASW][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[ASN][1000 genomes]
rs6540659	0.95[ASN][1000 genomes]
rs6540666	0.86[ASN][1000 genomes]
rs6540667	0.86[ASN][1000 genomes]
rs6540669	0.86[ASN][1000 genomes]
rs6660415	0.84[GIH][hapmap]
rs6684075	0.86[ASN][1000 genomes]
rs6697578	0.81[JPT][hapmap]
rs6700303	0.86[ASN][1000 genomes]
rs7516636	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530182	0.86[ASN][1000 genomes]
rs7537388	0.81[GIH][hapmap]
rs867849	1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[ASN][1000 genomes]
rs9430056	0.86[ASN][1000 genomes]
rs9430057	0.84[ASN][1000 genomes]
rs9430058	0.86[ASN][1000 genomes]
rs946142	1.00[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211280800-211290800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:211280800-211300200	Weak transcription	HSMMtube	muscle
3	chr1:211285600-211299400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211287800-211291600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211288000-211292000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211289600-211290800	Strong transcription	HSMM	muscle

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