Variant report

Variant	rs6669890
Chromosome Location	chr1:71193637-71193638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11209690	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092951	1.00[YRI][hapmap]
rs12096502	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1577367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131396	0.93[YRI][hapmap]
rs60469012	1.00[AMR][1000 genomes]
rs72928383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928385	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9662819	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71193200-71193800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr1:71193200-71194000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:71193200-71194200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:71193400-71194200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:71193400-71194200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:71193400-71194800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:71193600-71193800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr1:71193600-71194000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:71193600-71194000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:71193600-71194200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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