Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10494694	0.90[ASN][1000 genomes]
rs11576452	0.85[CHB][hapmap]
rs12402555	0.90[ASN][1000 genomes]
rs12407160	0.90[ASN][1000 genomes]
rs12731751	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550167	0.90[ASN][1000 genomes]
rs17615197	0.88[ASN][1000 genomes]
rs17615584	0.93[ASN][1000 genomes]
rs17615608	0.93[ASN][1000 genomes]
rs2119855	0.90[EUR][1000 genomes]
rs2119856	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2224700	0.90[ASN][1000 genomes]
rs34886976	0.88[ASN][1000 genomes]
rs35224110	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6669916	0.99[EUR][1000 genomes]
rs74131275	0.93[ASN][1000 genomes]
rs74131282	0.90[ASN][1000 genomes]
rs74131290	0.90[ASN][1000 genomes]
rs74131294	0.90[ASN][1000 genomes]
rs7511906	0.90[ASN][1000 genomes]
rs7553854	0.88[ASN][1000 genomes]
rs958436	0.93[ASN][1000 genomes]
rs958437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194001800-194002000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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