Variant report

Variant	rs667128
Chromosome Location	chr12:10961174-10961175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17809746	1.00[ASW][hapmap]
rs2232956	0.81[EUR][1000 genomes]
rs2418105	0.81[EUR][1000 genomes]
rs2900550	0.81[EUR][1000 genomes]
rs3851578	0.81[EUR][1000 genomes]
rs3906864	0.82[EUR][1000 genomes]
rs612808	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs619381	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs621112	0.81[EUR][1000 genomes]
rs6488328	0.81[EUR][1000 genomes]
rs666841	0.81[EUR][1000 genomes]
rs669503	0.85[EUR][1000 genomes]
rs7299578	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs667128	TAS2R13	cis	cerebellum	SCAN
rs667128	TAS2R45	N/A	lymphoblastoid	RTeQTL
rs667128	TAS2R43	cis	cerebellum	SCAN
rs667128	TAS2R9	cis	parietal	SCAN
rs667128	TAS2R10	cis	parietal	SCAN
rs667128	TAS2R8	cis	parietal	SCAN
rs667128	PRR4	cis	parietal	SCAN
rs667128	TAS2R43	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10960600-10961200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:10961000-10961400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:10961000-10961400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:10961000-10961800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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