Variant report

Variant	rs6671576
Chromosome Location	chr1:211119849-211119850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211113880..211115899-chr1:211118245..211120568,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11119635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072849	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084848	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087790	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017085	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933520	1.00[ASN][1000 genomes]
rs56919772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57821233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58216144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59431775	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797977	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671566	0.98[AFR][1000 genomes]
rs73073450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556274	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556549	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211112200-211124000	Weak transcription	HSMMtube	muscle
2	chr1:211112400-211120000	Weak transcription	HSMM	muscle
3	chr1:211112800-211124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211118000-211120000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links