The 2.0 version of rSNPBase

Variant report

Variant rs6671749
Chromosome Location chr1:94059633-94059634
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94025600-94073800 Weak transcription Fetal Brain Female brain
2 chr1:94042200-94063200 Weak transcription Brain Germinal Matrix brain
3 chr1:94048600-94064200 Weak transcription Brain Inferior Temporal Lobe brain
4 chr1:94053600-94063000 Genic enhancers Muscle Satellite Cultured Cells --
5 chr1:94054400-94061000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr1:94054600-94062000 Weak transcription Brain Substantia Nigra brain
7 chr1:94055800-94061000 Weak transcription Aorta Aorta
8 chr1:94056000-94066000 Weak transcription Ovary ovary
9 chr1:94056800-94060200 Enhancers Pancreas Pancrea
10 chr1:94057000-94060200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:94057000-94060200 Active TSS Pancreatic Islets Pancreatic Islet
12 chr1:94057000-94060200 Genic enhancers HMEC breast
13 chr1:94057200-94060000 Flanking Active TSS Duodenum Mucosa Duodenum
14 chr1:94057200-94060200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:94057200-94060400 Enhancers Left Ventricle heart
16 chr1:94057200-94060400 Enhancers Psoas Muscle Psoas
17 chr1:94057400-94068000 Genic enhancers HSMM muscle
18 chr1:94057400-94069200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:94057400-94071000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:94057600-94061000 Enhancers Fetal Muscle Trunk muscle
21 chr1:94057600-94106400 Weak transcription Primary B cells from cord blood blood
22 chr1:94057800-94059800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:94057800-94060200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:94057800-94060200 Enhancers Esophagus oesophagus
25 chr1:94057800-94061800 Enhancers Placenta Placenta
26 chr1:94058000-94059800 Weak transcription Fetal Thymus thymus
27 chr1:94058000-94060000 Bivalent Enhancer Fetal Heart heart
28 chr1:94058000-94060000 Enhancers Stomach Smooth Muscle stomach
29 chr1:94058000-94060200 Enhancers Right Atrium heart
30 chr1:94058000-94062000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:94058000-94062800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:94058000-94062800 Genic enhancers NHEK skin
33 chr1:94058000-94066600 Enhancers Adipose Nuclei Adipose
34 chr1:94058000-94066600 Enhancers Fetal Muscle Leg muscle
35 chr1:94058200-94059800 Weak transcription Primary B cells from peripheral blood blood
36 chr1:94058200-94060800 Weak transcription NH-A brain
37 chr1:94058200-94061400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:94058200-94064600 Weak transcription HUVEC blood vessel
39 chr1:94058200-94065000 Enhancers Colon Smooth Muscle Colon
40 chr1:94058400-94059800 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:94058400-94059800 Weak transcription HSMMtube muscle
42 chr1:94058400-94060000 Enhancers Fetal Stomach stomach
43 chr1:94058400-94060200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:94058400-94060200 Enhancers Gastric stomach
45 chr1:94058400-94060400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:94058400-94061200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr1:94058400-94062800 Enhancers A549 lung
48 chr1:94058400-94063200 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr1:94058400-94065200 Enhancers NHDF-Ad bronchial
50 chr1:94058400-94068800 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015