Variant report

Variant	rs6672055
Chromosome Location	chr1:220777681-220777682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10495150	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1073461	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803495	0.87[EUR][1000 genomes]
rs1193031	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12070516	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1337571	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786612	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35322308	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36024488	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59609557	0.87[EUR][1000 genomes]
rs6541152	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541153	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660022	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667072	0.87[EUR][1000 genomes]
rs6668644	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669644	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676051	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6676985	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093505	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093521	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093530	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73101870	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73105459	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73107667	0.87[EUR][1000 genomes]
rs7512507	1.00[CEU][hapmap]
rs7518985	1.00[CEU][hapmap]
rs7547630	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7547728	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7550069	0.86[EUR][1000 genomes]
rs7556342	1.00[CEU][hapmap]
rs767374	0.87[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
2	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
3	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
4	chr1:220753400-220778400	Weak transcription	NHEK	skin
5	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:220762600-220780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:220764400-220779200	Weak transcription	Fetal Heart	heart
10	chr1:220767400-220798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:220767600-220799000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:220767800-220784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:220768000-220790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:220768200-220778200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:220768200-220784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:220768200-220791600	Weak transcription	Brain Germinal Matrix	brain
20	chr1:220768400-220799000	Weak transcription	Adipose Nuclei	Adipose
21	chr1:220768800-220784400	Weak transcription	Fetal Brain Female	brain
22	chr1:220773400-220784600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:220774000-220796000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:220775400-220788400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:220776000-220798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:220776400-220789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:220776400-220790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:220776600-220783400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:220777200-220793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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