Variant report

Variant	rs6672135
Chromosome Location	chr1:194007629-194007630
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157295	0.95[EUR][1000 genomes]
rs10429908	0.85[EUR][1000 genomes]
rs10733081	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10801283	0.96[ASN][1000 genomes]
rs10921491	0.82[EUR][1000 genomes]
rs10921493	0.91[ASN][1000 genomes]
rs10921494	0.91[ASN][1000 genomes]
rs12124021	0.80[EUR][1000 genomes]
rs1442421	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2895663	0.85[EUR][1000 genomes]
rs34143337	0.82[EUR][1000 genomes]
rs627525	0.80[EUR][1000 genomes]
rs7417488	0.83[EUR][1000 genomes]
rs9783003	0.80[EUR][1000 genomes]
rs9943099	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9943193	0.83[EUR][1000 genomes]
rs9943194	0.83[EUR][1000 genomes]
rs9943286	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194007600-194008800	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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