Variant report

Variant	rs6672233
Chromosome Location	chr1:211517254-211517255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:211517015-211517280	MCF10A-Er-Src	breast:	n/a	chr1:211517151-211517159 chr1:211517150-211517160 chr1:211517152-211517159
2	FOSL1	chr1:211516832-211517432	HCT-116	colon:	n/a	chr1:211517151-211517159 chr1:211517150-211517160 chr1:211517152-211517159
3	FOS	chr1:211516991-211517265	MCF10A-Er-Src	breast:	n/a	chr1:211517151-211517159 chr1:211517150-211517160 chr1:211517152-211517159

No.	Distal block	Cell Line	Cell type
1	chr1:211516288..211519071-chr1:211523168..211524871,2	K562	blood:
2	chr1:211513214..211514747-chr1:211516722..211518694,2	MCF-7	breast:
3	chr1:211507738..211509573-chr1:211515799..211517354,2	K562	blood:
4	chr1:211511449..211513491-chr1:211515653..211518862,3	K562	blood:

Variant related genes	Relation type
TRAF5	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10732682	0.92[EUR][1000 genomes]
rs10746434	0.82[EUR][1000 genomes]
rs10779554	0.92[EUR][1000 genomes]
rs1084982	0.92[EUR][1000 genomes]
rs1084983	0.96[EUR][1000 genomes]
rs1084986	0.89[EUR][1000 genomes]
rs10863886	0.92[EUR][1000 genomes]
rs10863887	0.92[EUR][1000 genomes]
rs11804635	0.84[EUR][1000 genomes]
rs1533219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1533220	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1663521	0.92[EUR][1000 genomes]
rs1707247	0.92[EUR][1000 genomes]
rs1707252	0.92[EUR][1000 genomes]
rs1707266	0.92[EUR][1000 genomes]
rs1707267	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1877476	0.96[EUR][1000 genomes]
rs1983259	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1983260	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2358215	0.96[EUR][1000 genomes]
rs2588658	0.92[EUR][1000 genomes]
rs2995846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3123302	0.96[EUR][1000 genomes]
rs3125840	0.84[EUR][1000 genomes]
rs3855878	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4347268	0.92[EUR][1000 genomes]
rs4370817	0.92[EUR][1000 genomes]
rs4556425	0.92[EUR][1000 genomes]
rs4951517	0.92[EUR][1000 genomes]
rs4951735	0.92[EUR][1000 genomes]
rs4951737	0.92[EUR][1000 genomes]
rs4951738	0.96[EUR][1000 genomes]
rs4951739	0.92[EUR][1000 genomes]
rs4951740	0.96[EUR][1000 genomes]
rs6540675	0.92[EUR][1000 genomes]
rs6540676	0.92[EUR][1000 genomes]
rs6540678	0.92[EUR][1000 genomes]
rs6657779	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6663627	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6671526	0.92[EUR][1000 genomes]
rs6688682	0.92[EUR][1000 genomes]
rs6692815	0.92[EUR][1000 genomes]
rs73072839	0.84[EUR][1000 genomes]
rs7517135	0.92[EUR][1000 genomes]
rs7527620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs784366	0.85[EUR][1000 genomes]
rs784367	0.96[EUR][1000 genomes]
rs784368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs784370	0.92[EUR][1000 genomes]
rs784371	0.89[EUR][1000 genomes]
rs784373	0.96[EUR][1000 genomes]
rs784374	0.96[EUR][1000 genomes]
rs784375	0.96[EUR][1000 genomes]
rs784377	1.00[AFR][1000 genomes]
rs784378	0.92[EUR][1000 genomes]
rs784380	0.92[EUR][1000 genomes]
rs784381	0.92[EUR][1000 genomes]
rs784387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs784388	0.96[EUR][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211502400-211519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:211502600-211519000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:211505000-211518800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:211505800-211529800	Weak transcription	Ovary	ovary
6	chr1:211506000-211518800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:211506200-211517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:211507800-211519000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:211508400-211519000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:211509200-211518800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:211509400-211519000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:211509600-211519000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:211509800-211517800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:211509800-211518800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:211509800-211521600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:211509800-211529200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:211509800-211544200	Weak transcription	HUVEC	blood vessel
18	chr1:211510400-211520800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr1:211510600-211555400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:211510800-211524000	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr1:211511200-211518800	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:211511400-211528600	Weak transcription	Right Atrium	heart
23	chr1:211511600-211533000	Weak transcription	Left Ventricle	heart
24	chr1:211511800-211518800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:211512200-211521600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:211513200-211518400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:211513200-211518800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:211513200-211520800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:211513200-211526600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:211513400-211517400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:211513400-211517600	Weak transcription	Fetal Thymus	thymus
32	chr1:211513400-211518800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:211513400-211518800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr1:211513400-211518800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:211513400-211519000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:211513400-211519000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:211513400-211524800	Weak transcription	A549	lung
38	chr1:211513400-211527000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:211513400-211528800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:211513600-211520200	Weak transcription	HSMMtube	muscle
41	chr1:211514400-211526600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr1:211514600-211517400	Weak transcription	Fetal Muscle Leg	muscle
43	chr1:211514600-211518600	Weak transcription	Lung	lung
44	chr1:211514600-211518800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:211514600-211521800	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr1:211514800-211527000	Weak transcription	Aorta	Aorta
47	chr1:211514800-211552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:211515000-211517400	Enhancers	Primary B cells from cord blood	blood
49	chr1:211515000-211517400	Weak transcription	Gastric	stomach
50	chr1:211515000-211526400	Weak transcription	Duodenum Mucosa	Duodenum

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