Variant report

Variant	rs66727510
Chromosome Location	chr7:48687262-48687263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12538472	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17132511	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17132514	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17132520	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4517068	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56328624	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58043122	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66481137	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67429470	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67925221	0.91[AMR][1000 genomes]
rs6948549	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6976521	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73096455	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7802150	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7807488	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48672600-48688800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48683400-48689000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:48687000-48687600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:48687200-48687400	Enhancers	Fetal Heart	heart
5	chr7:48687200-48687600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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