Variant report

Variant	rs6672776
Chromosome Location	chr1:172849667-172849668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489276	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10912488	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10912490	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10912491	0.82[EUR][1000 genomes]
rs12021711	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12025176	0.80[EUR][1000 genomes]
rs12037853	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047983	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136659	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12403628	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12411259	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12728265	0.90[EUR][1000 genomes]
rs12739009	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12748081	0.90[EUR][1000 genomes]
rs2157453	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2157454	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2187892	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2213742	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2213745	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34884278	0.80[ASN][1000 genomes]
rs35715673	0.90[EUR][1000 genomes]
rs4145468	0.82[EUR][1000 genomes]
rs4916198	0.86[EUR][1000 genomes]
rs4916283	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4916285	0.82[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55724017	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425143	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6425145	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6425146	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425162	0.91[ASN][1000 genomes]
rs6661686	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673011	0.91[ASN][1000 genomes]
rs6699678	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68143871	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7517810	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7527462	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9286879	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6672776	ANKRD45	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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