Variant report

Variant	rs6673190
Chromosome Location	chr1:93367228-93367229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10157869	1.00[EUR][1000 genomes]
rs10159030	1.00[EUR][1000 genomes]
rs1114004	1.00[EUR][1000 genomes]
rs13373836	1.00[EUR][1000 genomes]
rs17131669	1.00[EUR][1000 genomes]
rs17131670	1.00[EUR][1000 genomes]
rs17131671	1.00[EUR][1000 genomes]
rs17131672	1.00[EUR][1000 genomes]
rs17131673	1.00[EUR][1000 genomes]
rs17131676	1.00[EUR][1000 genomes]
rs17131677	1.00[EUR][1000 genomes]
rs4394666	1.00[EUR][1000 genomes]
rs59078677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60165854	1.00[EUR][1000 genomes]
rs61318253	1.00[EUR][1000 genomes]
rs9324344	1.00[EUR][1000 genomes]
rs9324345	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93363600-93369400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:93364000-93368800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:93364000-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:93364600-93375200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:93365000-93373800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:93365800-93367400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:93365800-93374600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:93366000-93368800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:93366000-93369000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:93366200-93369400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:93366400-93368000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:93366400-93368600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr1:93366400-93369000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:93366400-93373800	Weak transcription	Liver	Liver
15	chr1:93366400-93409200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:93366600-93368000	Genic enhancers	Thymus	Thymus
17	chr1:93366600-93375000	Weak transcription	Brain Angular Gyrus	brain
18	chr1:93366800-93367400	Genic enhancers	Fetal Thymus	thymus
19	chr1:93366800-93368000	Strong transcription	Aorta	Aorta
20	chr1:93366800-93368400	Strong transcription	Dnd41	blood
21	chr1:93366800-93369000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:93366800-93369400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:93367000-93367600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:93367000-93367600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:93367000-93367600	Enhancers	Brain Cingulate Gyrus	brain
26	chr1:93367000-93367600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:93367000-93367800	Enhancers	Fetal Muscle Trunk	muscle
28	chr1:93367000-93367800	Enhancers	HSMMtube	muscle
29	chr1:93367000-93368200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:93367000-93368400	ZNF genes & repeats	Fetal Stomach	stomach
31	chr1:93367000-93390400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:93367200-93367600	Enhancers	Spleen	Spleen
33	chr1:93367200-93367800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:93367200-93367800	Enhancers	HSMM	muscle
35	chr1:93367200-93368000	Enhancers	Lung	lung
36	chr1:93367200-93368400	Strong transcription	Primary B cells from cord blood	blood
37	chr1:93367200-93368800	Strong transcription	Primary T cells from cord blood	blood

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