Variant report
| Variant | rs6673589 |
|---|---|
| Chromosome Location | chr1:220577036-220577037 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MARK1-3 | chr1:220574464-220577375 | ENSG00000260505.1 |
| 2 | lnc-MARK1-3 | chr1:220575499-220577375 | NONHSAT009599 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10495148 | 1.00[AMR][1000 genomes] |
| rs10746397 | 1.00[AMR][1000 genomes] |
| rs10863548 | 1.00[AMR][1000 genomes] |
| rs10863549 | 1.00[AMR][1000 genomes] |
| rs11118540 | 1.00[AMR][1000 genomes] |
| rs1112147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11799728 | 1.00[AMR][1000 genomes] |
| rs11800084 | 1.00[AMR][1000 genomes] |
| rs11800803 | 1.00[AMR][1000 genomes] |
| rs11801306 | 1.00[AMR][1000 genomes] |
| rs11802827 | 1.00[AMR][1000 genomes] |
| rs11803715 | 1.00[AMR][1000 genomes] |
| rs11810690 | 1.00[AMR][1000 genomes] |
| rs11811839 | 1.00[AMR][1000 genomes] |
| rs1338769 | 1.00[AMR][1000 genomes] |
| rs1338772 | 1.00[AMR][1000 genomes] |
| rs1361254 | 1.00[AMR][1000 genomes] |
| rs1361255 | 1.00[AMR][1000 genomes] |
| rs1511696 | 1.00[AMR][1000 genomes] |
| rs1578050 | 1.00[MEX][hapmap] |
| rs17007924 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs17008033 | 1.00[AMR][1000 genomes] |
| rs1999937 | 1.00[AMR][1000 genomes] |
| rs3860320 | 1.00[AMR][1000 genomes] |
| rs4282827 | 1.00[AMR][1000 genomes] |
| rs57176776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6541144 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6660112 | 1.00[AMR][1000 genomes] |
| rs6671023 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6684421 | 1.00[AMR][1000 genomes] |
| rs6696558 | 1.00[AMR][1000 genomes] |
| rs6704108 | 1.00[AMR][1000 genomes] |
| rs74139644 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7512854 | 1.00[AMR][1000 genomes] |
| rs7527902 | 1.00[AMR][1000 genomes] |
| rs7536389 | 1.00[AMR][1000 genomes] |
| rs7550011 | 1.00[AMR][1000 genomes] |
| rs7554825 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:220565400-220583000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
