Variant report

Variant	rs6674597
Chromosome Location	chr1:211509896-211509897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211499439..211506012-chr1:211509469..211515158,9	K562	blood:
2	chr1:211509710..211514697-chr1:211515653..211521116,6	K562	blood:
3	chr1:211509631..211511913-chr1:211521959..211524748,2	K562	blood:
4	chr1:211498955..211501827-chr1:211507138..211510053,3	MCF-7	breast:
5	chr1:211509250..211511286-chr1:211512898..211514844,2	MCF-7	breast:
6	chr1:211500641..211502521-chr1:211509296..211511473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082512	Chromatin interaction

rs_ID	r²[population]
rs11580728	0.89[YRI][hapmap]
rs28375813	0.97[AFR][1000 genomes]
rs59683092	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664639	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684161	0.89[YRI][hapmap]
rs74137658	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211501200-211511000	Enhancers	Stomach Mucosa	stomach
2	chr1:211501200-211515200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr1:211502400-211519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:211502600-211519000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:211504200-211511000	Weak transcription	Placenta	Placenta
6	chr1:211504800-211513000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:211505000-211518800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:211505600-211510600	Weak transcription	Right Atrium	heart
10	chr1:211505800-211511200	Weak transcription	Lung	lung
11	chr1:211505800-211512200	Weak transcription	Fetal Stomach	stomach
12	chr1:211505800-211512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:211505800-211513000	Weak transcription	NHEK	skin
14	chr1:211505800-211529800	Weak transcription	Ovary	ovary
15	chr1:211506000-211512600	Weak transcription	HSMMtube	muscle
16	chr1:211506000-211512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:211506000-211514200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:211506000-211517200	Weak transcription	Fetal Lung	lung
19	chr1:211506000-211518800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:211506200-211510600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:211506200-211514400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:211506200-211517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:211506600-211512200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:211506600-211515200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:211506600-211516800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:211507200-211514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr1:211507800-211519000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:211508000-211511400	Enhancers	Colonic Mucosa	Colon
29	chr1:211508000-211515200	Enhancers	Pancreas	Pancrea
30	chr1:211508200-211510000	Enhancers	Fetal Intestine Small	intestine
31	chr1:211508200-211511200	Enhancers	Gastric	stomach
32	chr1:211508400-211510000	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr1:211508400-211510000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr1:211508400-211510000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr1:211508400-211510400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:211508400-211510600	Enhancers	Spleen	Spleen
37	chr1:211508400-211519000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:211508600-211510000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr1:211508600-211510000	Enhancers	Aorta	Aorta
40	chr1:211508600-211510200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr1:211508800-211510000	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr1:211508800-211510000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr1:211508800-211510000	Enhancers	Dnd41	blood
44	chr1:211509000-211510000	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr1:211509000-211510000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:211509000-211510200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:211509000-211510400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr1:211509000-211511600	Enhancers	Left Ventricle	heart
49	chr1:211509200-211510400	Enhancers	Fetal Muscle Trunk	muscle
50	chr1:211509200-211511800	Enhancers	Thymus	Thymus

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