Variant report

Variant	rs6675248
Chromosome Location	chr1:210664959-210664960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11119524	0.85[CHB][hapmap]
rs11119525	0.88[CHB][hapmap]
rs12021963	0.84[CHB][hapmap]
rs12034655	0.99[ASN][1000 genomes]
rs12037995	0.87[ASN][1000 genomes]
rs12042142	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs12239285	0.85[CHB][hapmap]
rs12569120	0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17260445	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs4845036	0.94[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs61828077	0.97[EUR][1000 genomes]
rs6691136	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs6692361	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs6697873	0.85[ASN][1000 genomes]
rs7354945	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs7513126	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7534700	0.85[CHB][hapmap]
rs7534803	0.83[CEU][hapmap];0.97[EUR][1000 genomes]
rs7550888	0.95[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210653800-210678800	Weak transcription	HSMM	muscle
4	chr1:210657000-210669600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:210663600-210669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210663600-210672400	Weak transcription	HSMMtube	muscle
7	chr1:210664800-210666000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:210664800-210669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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