Variant report

Variant	rs6675368
Chromosome Location	chr1:220718372-220718373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220718228..220719005-chr1:220906200..220906909,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10495149	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10746403	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10779412	0.95[CEU][hapmap];0.96[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs10779414	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10863557	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118564	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118565	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11118566	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118567	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118573	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11118576	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118579	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118584	0.81[AMR][1000 genomes]
rs11588721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12047297	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12408540	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12735691	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12737023	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1933001	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933007	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2095669	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2152836	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2244448	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2378400	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes]
rs2589581	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2589586	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2589589	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786598	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2786606	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2786610	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2786617	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2889895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs35287074	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3753873	0.81[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3753874	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3767319	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs3767320	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3767321	0.95[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap]
rs3767323	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs3860322	0.82[EUR][1000 genomes]
rs3899315	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.82[AMR][1000 genomes]
rs4846326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846650	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846653	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4846655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6541154	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6695583	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs7514431	0.80[CEU][hapmap]
rs7556280	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9430949	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220703400-220724400	Weak transcription	Aorta	Aorta
2	chr1:220706000-220723800	Weak transcription	Fetal Brain Male	brain
3	chr1:220715600-220718600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:220716000-220722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:220716600-220718600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:220717600-220718800	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:220717800-220718800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:220718000-220718400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:220718000-220718600	Enhancers	Fetal Heart	heart
10	chr1:220718000-220722200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:220718000-220722200	Weak transcription	Brain Angular Gyrus	brain
12	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:220718200-220718400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:220718200-220718400	Weak transcription	Esophagus	oesophagus
15	chr1:220718200-220718600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:220718200-220726200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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