Variant report
| Variant | rs6676482 |
|---|---|
| Chromosome Location | chr1:195793563-195793564 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:195793131..195796113-chr1:195827514..195829536,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12061613 | 1.00[EUR][1000 genomes] |
| rs16838961 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56742030 | 1.00[EUR][1000 genomes] |
| rs57057259 | 1.00[EUR][1000 genomes] |
| rs58467507 | 1.00[EUR][1000 genomes] |
| rs59718710 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6658165 | 1.00[EUR][1000 genomes] |
| rs6690674 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73056343 | 1.00[EUR][1000 genomes] |
| rs73056346 | 1.00[EUR][1000 genomes] |
| rs73056348 | 1.00[EUR][1000 genomes] |
| rs73056357 | 1.00[EUR][1000 genomes] |
| rs73060547 | 1.00[EUR][1000 genomes] |
| rs73060549 | 1.00[EUR][1000 genomes] |
| rs73060550 | 1.00[EUR][1000 genomes] |
| rs73060553 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73060560 | 1.00[EUR][1000 genomes] |
| rs73060569 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73060572 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73065150 | 1.00[EUR][1000 genomes] |
| rs73071004 | 1.00[EUR][1000 genomes] |
| rs73071007 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73071048 | 1.00[EUR][1000 genomes] |
| rs73071050 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73071052 | 1.00[EUR][1000 genomes] |
| rs73071054 | 1.00[EUR][1000 genomes] |
| rs73071058 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872937 | chr1:195493538-195849028 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1007203 | chr1:195672857-195902360 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv872941 | chr1:195770204-195820337 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1014402 | chr1:195792089-195877256 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:195790600-195793800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr1:195793400-195794400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
