Variant report

Variant	rs66769846
Chromosome Location	chr6:64339705-64339706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64333077..64334618-chr6:64338203..64341053,2	K562	blood:
2	chr6:64336940..64342168-chr6:64343092..64347211,10	K562	blood:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1062193	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11755111	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11756680	0.89[ASN][1000 genomes]
rs11757655	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11759362	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1197892	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1210839	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1681953	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1681967	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16879705	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16894454	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16894460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16894480	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16894493	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744156	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744163	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1872288	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905595	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923521	0.89[ASN][1000 genomes]
rs1923522	0.89[ASN][1000 genomes]
rs2075656	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2622310	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2622313	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28396397	0.89[ASN][1000 genomes]
rs28635226	0.89[ASN][1000 genomes]
rs2881842	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35468218	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35811627	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800494	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3857527	0.88[ASN][1000 genomes]
rs4710434	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56950873	0.89[ASN][1000 genomes]
rs56977573	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57258726	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57519486	0.89[ASN][1000 genomes]
rs57899418	0.89[ASN][1000 genomes]
rs58016244	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58173616	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58374599	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58779953	0.89[ASN][1000 genomes]
rs59458355	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59589817	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60727297	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60863270	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61382532	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61426335	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61580957	0.88[ASN][1000 genomes]
rs6454298	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66500769	0.89[ASN][1000 genomes]
rs66508463	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66514362	0.87[EUR][1000 genomes]
rs66559225	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66618112	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66648865	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66683185	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66924207	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66943356	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66984720	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67048845	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67118169	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67125777	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67260200	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67549604	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67640372	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67805256	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67879075	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67885904	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929720	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6936079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72880876	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72880879	0.89[ASN][1000 genomes]
rs72880884	0.89[ASN][1000 genomes]
rs72882716	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72882748	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72882751	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7746492	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7766283	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766347	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767556	0.89[ASN][1000 genomes]
rs9449520	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64338000-64342400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:64338200-64340600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:64339200-64340600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:64339600-64341000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links