Variant report

Variant	rs6677068
Chromosome Location	chr1:94377689-94377690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10489606	1.00[AMR][1000 genomes]
rs11165033	0.87[AMR][1000 genomes]
rs12065890	1.00[AMR][1000 genomes]
rs12068148	0.87[AMR][1000 genomes]
rs12068954	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078344	1.00[AMR][1000 genomes]
rs17110613	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17878538	1.00[AMR][1000 genomes]
rs2221923	1.00[EUR][1000 genomes]
rs35650636	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56324350	1.00[AMR][1000 genomes]
rs58024738	1.00[EUR][1000 genomes]
rs58126899	1.00[EUR][1000 genomes]
rs58750328	1.00[EUR][1000 genomes]
rs59101071	1.00[AMR][1000 genomes]
rs59493724	1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs60179644	1.00[EUR][1000 genomes]
rs60188127	1.00[EUR][1000 genomes]
rs60226009	1.00[EUR][1000 genomes]
rs60680584	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61564641	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6541391	1.00[EUR][1000 genomes]
rs6541392	1.00[EUR][1000 genomes]
rs6541407	1.00[EUR][1000 genomes]
rs6661879	1.00[EUR][1000 genomes]
rs6671646	1.00[EUR][1000 genomes]
rs6675622	1.00[EUR][1000 genomes]
rs6686775	1.00[EUR][1000 genomes]
rs6696070	1.00[EUR][1000 genomes]
rs6703195	1.00[EUR][1000 genomes]
rs72967379	1.00[EUR][1000 genomes]
rs72971232	1.00[EUR][1000 genomes]
rs72971262	1.00[EUR][1000 genomes]
rs72971265	1.00[EUR][1000 genomes]
rs72971278	1.00[EUR][1000 genomes]
rs72971281	1.00[EUR][1000 genomes]
rs72971288	1.00[EUR][1000 genomes]
rs72972706	1.00[EUR][1000 genomes]
rs72972731	1.00[EUR][1000 genomes]
rs72972736	1.00[EUR][1000 genomes]
rs72972747	1.00[EUR][1000 genomes]
rs72972748	1.00[EUR][1000 genomes]
rs7521107	1.00[EUR][1000 genomes]
rs7525976	1.00[EUR][1000 genomes]
rs7526263	1.00[EUR][1000 genomes]
rs7530436	1.00[EUR][1000 genomes]
rs7530531	1.00[EUR][1000 genomes]
rs7537686	1.00[EUR][1000 genomes]
rs7541690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7542402	1.00[EUR][1000 genomes]
rs7542625	1.00[EUR][1000 genomes]
rs7543184	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544121	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7548581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs871855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523355	chr1:94351328-94385591	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94376000-94382000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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