The 2.0 version of rSNPBase

Variant report

Variant rs6677862
Chromosome Location chr1:93575048-93575049
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93545800-93578400 Weak transcription Pancreas Pancrea
2 chr1:93546200-93602200 Weak transcription Aorta Aorta
3 chr1:93547200-93576800 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:93547400-93581800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:93547600-93580600 Weak transcription Adipose Nuclei Adipose
6 chr1:93547600-93580600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:93547600-93600000 Weak transcription HSMMtube muscle
8 chr1:93547800-93575400 Weak transcription Hela-S3 cervix
9 chr1:93547800-93580600 Weak transcription Fetal Kidney kidney
10 chr1:93548000-93601800 Weak transcription NHLF lung
11 chr1:93548200-93576600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:93548200-93576600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:93548200-93576800 Weak transcription Osteobl bone
14 chr1:93548200-93578400 Weak transcription Lung lung
15 chr1:93548800-93581600 Weak transcription Small Intestine intestine
16 chr1:93549000-93576800 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr1:93549000-93582400 Weak transcription HMEC breast
18 chr1:93549000-93582800 Weak transcription NHEK skin
19 chr1:93551400-93579800 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:93551600-93578400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:93551800-93576600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:93551800-93579800 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:93552000-93580000 Weak transcription NH-A brain
24 chr1:93555400-93581000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:93559400-93576600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:93559400-93581000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:93560200-93575600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:93560200-93581600 Weak transcription Brain Anterior Caudate brain
29 chr1:93561800-93575400 Weak transcription HepG2 liver
30 chr1:93563400-93582000 Weak transcription Esophagus oesophagus
31 chr1:93564000-93581800 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:93565200-93625200 Weak transcription Stomach Mucosa stomach
33 chr1:93566600-93575400 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr1:93566600-93575600 Weak transcription H1 Cell Line embryonic stem cell
35 chr1:93566600-93576800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr1:93567400-93575400 Weak transcription Left Ventricle heart
37 chr1:93567800-93575400 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr1:93568400-93584200 Weak transcription Fetal Brain Male brain
39 chr1:93570000-93575400 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr1:93570000-93582200 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:93570200-93581600 Weak transcription Ovary ovary
42 chr1:93570400-93575400 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:93570600-93576800 Weak transcription ES-WA7 Cell Line embryonic stem cell
44 chr1:93571400-93602200 Weak transcription Colonic Mucosa Colon
45 chr1:93571600-93575200 Strong transcription Primary T helper cells PMA-I stimulated --
46 chr1:93571600-93578400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:93571600-93581600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:93571800-93575400 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr1:93571800-93576000 Weak transcription HUVEC blood vessel
50 chr1:93572400-93577200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015