Variant report

Variant	rs6678066
Chromosome Location	chr1:197221904-197221905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10429911	1.00[CEU][hapmap]
rs10732295	1.00[CEU][hapmap]
rs10732296	1.00[CEU][hapmap]
rs10754219	1.00[CEU][hapmap]
rs1115247	0.87[CEU][hapmap]
rs12677	0.87[CEU][hapmap]
rs1332662	0.87[CEU][hapmap]
rs1332663	0.87[CEU][hapmap]
rs1412631	0.87[CEU][hapmap]
rs1412632	0.87[CEU][hapmap]
rs1412634	0.87[CEU][hapmap]
rs1415217	1.00[CEU][hapmap]
rs1556763	1.00[CEU][hapmap]
rs1571964	0.87[CEU][hapmap]
rs1764629	0.94[EUR][1000 genomes]
rs1764796	0.85[AMR][1000 genomes]
rs1764800	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2026429	0.87[CEU][hapmap]
rs2151134	1.00[CEU][hapmap]
rs2786114	0.84[EUR][1000 genomes]
rs4342879	1.00[CEU][hapmap]
rs4350226	1.00[CEU][hapmap]
rs476390	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4915337	0.87[CEU][hapmap]
rs4915378	1.00[CEU][hapmap]
rs4915379	1.00[CEU][hapmap]
rs510135	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs518149	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs568757	0.97[EUR][1000 genomes]
rs571106	0.94[EUR][1000 genomes]
rs615647	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs616675	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6656448	1.00[CEU][hapmap]
rs6656858	0.87[CEU][hapmap]
rs6677082	0.87[CEU][hapmap]
rs668590	0.87[EUR][1000 genomes]
rs6703400	0.87[CEU][hapmap]
rs7513826	1.00[CEU][hapmap]
rs7520503	1.00[CEU][hapmap]
rs7523013	1.00[CEU][hapmap]
rs7534353	0.87[CEU][hapmap]
rs7542397	0.87[CEU][hapmap]
rs877897	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197221800-197222200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:197221800-197222400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:197221800-197222400	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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