Variant report

Variant	rs6678135
Chromosome Location	chr1:173303335-173303336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10798270	1.00[EUR][1000 genomes]
rs1418193	1.00[EUR][1000 genomes]
rs16845740	1.00[EUR][1000 genomes]
rs1832847	1.00[EUR][1000 genomes]
rs2422342	1.00[EUR][1000 genomes]
rs2422428	1.00[EUR][1000 genomes]
rs4916329	1.00[EUR][1000 genomes]
rs6669012	1.00[EUR][1000 genomes]
rs6671598	1.00[EUR][1000 genomes]
rs6689832	1.00[EUR][1000 genomes]
rs6696532	1.00[EUR][1000 genomes]
rs6700353	1.00[EUR][1000 genomes]
rs73039105	1.00[EUR][1000 genomes]
rs73039113	1.00[EUR][1000 genomes]
rs73039196	1.00[EUR][1000 genomes]
rs73041112	1.00[EUR][1000 genomes]
rs73041128	1.00[EUR][1000 genomes]
rs7544153	1.00[EUR][1000 genomes]
rs947503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173299200-173310000	Weak transcription	HSMMtube	muscle
2	chr1:173299200-173311200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:173299200-173316600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:173299800-173316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
6	chr1:173301000-173309400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:173301000-173310600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:173301200-173306200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:173301400-173304800	Weak transcription	Small Intestine	intestine
10	chr1:173301400-173321200	Weak transcription	Ovary	ovary
11	chr1:173301600-173304600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:173301600-173306200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:173301600-173311000	Weak transcription	Gastric	stomach
14	chr1:173301800-173310200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:173303000-173305400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr1:173303000-173310000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:173303000-173310000	Weak transcription	NHDF-Ad	bronchial
18	chr1:173303200-173306400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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