Variant report

Variant	rs6678283
Chromosome Location	chr1:211163039-211163040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10494931	0.81[CEU][hapmap]
rs10494932	0.81[CEU][hapmap]
rs10863870	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10863874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11119637	0.87[ASN][1000 genomes]
rs11119658	0.81[CEU][hapmap]
rs11119662	0.87[ASN][1000 genomes]
rs11485203	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11578692	0.95[AFR][1000 genomes]
rs11579078	0.93[AFR][1000 genomes]
rs11582507	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs11583101	0.81[CEU][hapmap]
rs12750762	0.87[AFR][1000 genomes]
rs12760791	0.80[ASW][hapmap];0.81[CEU][hapmap]
rs1393026	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1393028	0.81[CEU][hapmap]
rs1501551	0.88[LWK][hapmap];0.92[YRI][hapmap]
rs1501558	0.93[ASW][hapmap];0.81[CEU][hapmap];0.88[LWK][hapmap];0.92[YRI][hapmap]
rs1501566	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501567	0.81[EUR][1000 genomes]
rs1501568	0.81[EUR][1000 genomes]
rs1501569	0.92[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs1539531	0.92[CEU][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs17188741	0.85[AFR][1000 genomes]
rs17188748	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs1875435	0.81[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs2221250	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs2358214	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33985151	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs35711968	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4314946	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4638187	0.95[AFR][1000 genomes]
rs61848994	0.81[EUR][1000 genomes]
rs6669457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6697578	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6702598	0.91[AFR][1000 genomes]
rs7414286	0.85[AFR][1000 genomes]
rs7517771	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7535286	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7536519	1.00[CEU][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs9662051	0.92[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6678283	IKBKE	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152600-211169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
3	chr1:211162400-211167600	Weak transcription	HSMM	muscle
4	chr1:211162600-211167000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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