The 2.0 version of rSNPBase

Variant report

Variant rs6678465
Chromosome Location chr1:93832020-93832021
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93812800-93832200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:93813400-93840000 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:93813400-93840400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:93815400-93839800 Weak transcription Aorta Aorta
5 chr1:93815600-93834800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:93816000-93832200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:93816600-93841800 Weak transcription Brain Cingulate Gyrus brain
8 chr1:93816800-93841200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr1:93817800-93832400 Weak transcription Psoas Muscle Psoas
10 chr1:93818000-93835400 Weak transcription Small Intestine intestine
11 chr1:93818400-93836000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:93818800-93837200 Weak transcription Fetal Kidney kidney
13 chr1:93819000-93833200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr1:93819400-93834600 Strong transcription Primary B cells from peripheral blood blood
15 chr1:93820600-93837200 Weak transcription Colonic Mucosa Colon
16 chr1:93821000-93838800 Weak transcription Ovary ovary
17 chr1:93821200-93835200 Weak transcription Stomach Smooth Muscle stomach
18 chr1:93822200-93835800 Strong transcription Dnd41 blood
19 chr1:93822200-93840200 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:93823800-93834600 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr1:93824200-93832200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:93824200-93832200 Weak transcription Fetal Intestine Small intestine
23 chr1:93824200-93833000 Weak transcription Esophagus oesophagus
24 chr1:93824200-93833000 Weak transcription Gastric stomach
25 chr1:93824200-93833400 Strong transcription Primary T cells fromperipheralblood blood
26 chr1:93824200-93838200 Weak transcription Pancreas Pancrea
27 chr1:93824200-93839400 Weak transcription Lung lung
28 chr1:93824200-93839800 Weak transcription Fetal Brain Female brain
29 chr1:93824200-93840000 Weak transcription Right Ventricle heart
30 chr1:93824200-93841000 Weak transcription Brain Germinal Matrix brain
31 chr1:93824200-93841000 Weak transcription Spleen Spleen
32 chr1:93824400-93839400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:93824400-93839400 Weak transcription Brain Anterior Caudate brain
34 chr1:93824400-93842000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:93824600-93833200 Weak transcription Placenta Amnion Placenta Amnion
36 chr1:93824600-93838200 Weak transcription Fetal Heart heart
37 chr1:93824600-93840000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr1:93825000-93836000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:93825200-93832400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr1:93825200-93833600 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr1:93825200-93840800 Weak transcription Brain Inferior Temporal Lobe brain
42 chr1:93825400-93833800 Strong transcription HUES48 Cell Line embryonic stem cell
43 chr1:93825400-93840600 Weak transcription iPS-15b Cell Line embryonic stem cell
44 chr1:93825600-93835200 Strong transcription HUES64 Cell Line embryonic stem cell
45 chr1:93825600-93839400 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr1:93825800-93832800 Weak transcription Brain Angular Gyrus brain
47 chr1:93826200-93833200 Strong transcription Primary T helper cells fromperipheralblood blood
48 chr1:93826200-93841400 Weak transcription Brain Hippocampus Middle brain
49 chr1:93826400-93835800 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr1:93826600-93833400 Strong transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015