Variant report

Variant	rs6678565
Chromosome Location	chr1:215362461-215362462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1015244	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10157448	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10159003	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10458471	1.00[CEU][hapmap]
rs10494995	0.91[EUR][1000 genomes]
rs11580781	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11582180	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12567974	0.81[AMR][1000 genomes]
rs1339408	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1339409	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1538545	0.94[EUR][1000 genomes]
rs1538546	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1556906	0.83[EUR][1000 genomes]
rs17024410	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4284239	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61818356	0.87[EUR][1000 genomes]
rs7526079	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7530450	1.00[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215356000-215364800	Weak transcription	NHLF	lung
2	chr1:215356000-215368400	Weak transcription	Fetal Brain Female	brain
3	chr1:215356200-215364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:215356200-215365200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:215360600-215363000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:215360800-215362800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:215361000-215362600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:215361000-215363000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:215362200-215363600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:215362400-215363000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:215362400-215363600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:215362400-215363600	Weak transcription	NHDF-Ad	bronchial
13	chr1:215362400-215364600	Weak transcription	Osteobl	bone
14	chr1:215362400-215365200	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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